Recent publications
BRULIN L., DUCROCQ S., ESTELLE J., EVEN G., MARTEL S., MERLIN S., AUDEBERT C., CROISEAU P., SANCHEZ M.P. 2024. The fecal microbiota of Holstein cows is heritable and genetically correlated to dairy performances. JDS https://doi.org/10.3168/jds.2024-25003 GeMS, GBOS
Denis E, Grohs C, Donnadieu C, Iampietro C. 2024. Validated DNA isolation method ensuring successful long-read sequencing of cattle semen genome. PlosOne. https://doi.org/10.1371/journal.pone.0308011 Gbos
Fresco S, Boichard D, Fritz S, Lefebvre R, Barbey S, Gaborit M, Martin P. 2024. Comparison of methane production, intensity, and yield throughout lactation in Holstein cows. J Dairy Sci https://doi.org/10.3168/jds.2022-22855 GBOS
Girardie O, Laloe D, Bonneau M, Billon Y, Bailly J, David I, Canario L. Primiparous sow behaviour on the day of farrowing as one of the primary contributors to the growth of piglets in early lactation. Scientif Rep. https://doi.org/10.1038/s41598-024-69358-8 Gibbs
2024
Basso B, Kistler T, Phocas F. 2024. Genetic parameters, trends, and inbreeding in a honeybee breeding program for royal jelly production and behavioral traits. Apidologie. https://doi.org/10.1007/s13592-023-01055-3
Bédère N, Dupont J, Baumard Y, Staub C, Gourichon D, Frédéric E, Le Roy P, Zerjal T. Genetic background of body reserves in laying hens through backfat thickness phenotyping. Peer Community Journal. https://doi.org/10.24072/pcjournal.412
Ben Braiek M, Moreno-Romieux C, Andre C, Astruc JM, Bardou P, Bordes A, Debat F, Fidelle F, Granado-Tajada I, Hoze C, Plisson-Petit F, Rivemale F, Sarry J, Tadi N, Woloszyn F, Fabre S. 2024. Searching for homozygous haplotype deficiency in Manech Tête Rousse dairy sheep revealed a nonsense variant in the MMUT gene affecting newborn lamb viability. Genet Sel Evol. https://doi.org/10.1186/s12711-024-00886-7
BEN-JEMAA S, BOUSSAHA M, MANDONNET N, BARDOU P, NAVES M. 2024. Uncovering structural variants in Creole cattle from Guadeloupe and their impact on environmental adaptation through whole genome sequencing. PlosOne https://doi.org/10.1371/journal.pone.0309411
Bernard L, Hurtaud C, Larroque H, Allain C, Parisot S, Cebo C. Feed restriction affects milk performances and decreases milk lipolysis in dairy ewes. Animal. https://doi.org/10.1016/j.animal.2024.101181
Bernard M, Lecoeur A, Coville J-L, Bruneau N, Jardet D, Lagarrigue S, Meynadier A, Calenge F, Pascal G, Zerjal T. 2024. Relationship between feed efficiency and gut microbiota in laying chickens under contrasting feeding conditions. Scientif Rep
Bessa Ducrot C, Barrio MB, Boissy A, Charrier F, Even S, Mormède P, Petit S, Pinard-van der laan M-H, Schelcher F, Casabianca F, Ducos A, Foucras G, Guatteo R, Peyraud J-L, Vayssier-Taussat M, Veysset P,Friggens NC,Fernandez X. 2024. Animal Board Invited Review: Improving animal health and welfare in the transition of livestock farming systems: towards social acceptability and sustainability. Animal. https://doi.org/10.1016/j.animal.2024.101100
Bessa Ferraira VH, Seressia J, Lansade L, Même N, Bernard J, Pinard-van der Laan M-H, Calenge F, Lecoeur A, Calandreau L, Dutour M. 2024. Discrimination of familiar and unfamiliar human voices is independent of prolonged human-animal interaction in domestic chicks. Applied Animal Behaviour Science. https://doi.org/10.1016/j.applanim.2023.106138
Bortoluzzi C, Restoux G, Rouger R, Desnoues B, Petitjean F, Bosse M, Tixier-Boichard M. 2024. Trends in genome diversity of small populations under a conservation program: a case study of two French chicken breeds. bioRXiv https://doi.org/10.1101/2024.02.22.581528
Brulin L, Ducrocq S, Even G, Sanchez M.-P, Martel S, Merlin S, Audebert C, Croiseau P, Estelle J. 2024. Characterization of bovine vaginal microbiota and its relationship with host fertility, health and production. Scientif Rep. https://doi.org/10.1038/s41598-024-69715-7
CAI Z, ISO-TOURU T., SANCHEZ M.-P., KADRI N., BOUWMAN A.C., CHITNEEDI P.K., MACLEOD I., VANDER JAGT C.J., CHAMBERLAIN A.J., GREDLER-GRANDL B., SPENGELER M., LUND M.S., BOICHARD D., KÜHN C., PAUSCH H., VILKKI J., SAHANA G. 2024. Meta-analysis of genome-wide association studies from six dairy cattle breeds reveals biologically relevant candidate genes for mastitis resistance. Gen Sel Evol https://doi.org/10.1186/s12711-024-00920-8
Clota F, Goikoetxea A, Vergnet A, Blanc MO, Lallement S, Ruelle F, Leitwein M, Allal F, Geffroy B, Vandeputte M. 2024. Post-larval exposure to warm temperature enhances female ratio, while starvation and photoperiod do not: The case of European seabass, Dicentrarchus labrax. Aquaculture. GenAqua https://doi.org/10.1016/j.aquaculture.2024.740758
Collin A, Coustham V, Tona JK, Tesseraud S, Mignon-Grasteau S, Méda B, Vitorino Carvalho A, Guyot Y, Lagarrigue S, Pitel F, Zerjal T. Face au changement climatique, quelles stratégies d’atténuation et d’adaptation pour les productions avicoles ? INRAE Productions Animales. https://doi.org/10.20870/productions-animales.2023.36.4.7384
Corbeau J, Grohs C, Jourdain J, Boussaha M, Besnard F, Barbat A, Plassard V, Rivière J, Hamelin C, Mortier J, Boichard D, Guatteo R, Capitan A. A recurrent de novo missense mutation of COL1A1 causes Osteogenesis Imperfecta type II and preterm delivery in Normande Cattle. Genet Sel Evol https://doi.org/10.1186/s12711-024-00909-3
Coste V, Sellem E, Marthey S, Hoze C, Bonnet A, Schibler L, Kieffer H, Jaffrezic F. 2024. Multi-omics data integration for the identification of predictive biomarkers for bull fertility. PlosOne. G2B, GiBBS https://doi.org/10.1371/journal.pone.0298623
Cuyabano BCD, Boichard D, Gondro C.2024. Expected values for the accuracy of predicted breeding values accounting for genetic differences between reference and target populations. Genet Sel Evol. https://doi.org/10.1186/s12711-024-00876-9
Débare H, Blanc F, Piton G, Leplat JJ, Vincent‑Naulleau S, Rivière J, Vilotte M, Marthey S, Lecardonnel J, Coville JL, Estellé J, Rau A, Bourneuf E, Egidy G. Malignant features of minipig melanomas prior to spontaneous regression. Scientif Rep. https://doi.org/10.1038/s41598-024-59741-w
Degrelle SA, Liu F, Laloe D, Richard C, Le Bourhis D, Rossignol MN, Hue I. 2024. Understanding bovine embryo elongation: a transcriptomic study of trophoblastic vesicles. Front Physiol https://doi.org/10.3389/fphys.2024.1331098
De Wolf J, Gouin C, Jouneau L, Glorion M, Premachandra A, Pascale F, Huriet M, Estephan J, Leplat JJ, Egidy G, Richard C, Gelin V, Urien C, Roux A, Le Guen M, Schwartz-Cornil I, Sage E. 2024. Prolonged dialysis during ex vivo lung perfusion promotes inflammatory responses. Front Immunol https://doi.org/10.3389/fimmu.2024.1365964
Dhorne-Pollet S, Barrey E. 2024. Le cheval Curly, un cheval aux poils frisés dit "hypoallergénique". Le Nouveau Praticien Vét équine. BIGE https://doi.org/10.1051/npvequi/2024006
Dhorne-Pollet S, Barrey E. 2024. Les gènes de la taille chez les chevaux : application à la production de poneys de sport. Le Nouveau Praticien Vét équine. BIGE https://doi.org/10.1051/npvequi/2024009
Dufour A, Kurilo C, Stöckl JB, Laloë D, Bailly Y, Manceau P, Martins F, Turhan AG, Ferchaud S, Pain B, Fröhlich T, Foissac S, Artus J, Acloque H. 2024. Cell specification and functional interactions in the pig blastocyst inferred from single cell transcriptomics and uterine fluids proteomics. Genomics. https://doi.org/10.1016/j.ygeno.2023.110780
Ernst S, Piestrzyńska-Kajtoch A, Gethmann J, Natonek-Wiśniewska M, Sadeghi B, Polak MP, Keller M, Gavier-Widén D, Moazami-Goudarzi K, Houston F, Groschup MH, Fast C. 2024 Prion protein gene (PRNP) variation in German and Danish cervids. Vet Res. https://doi.org/10.1186/s13567-024-01340-8
Fouéré C, Hozé C, Besnard F, Boussaha M, Boichard D, Sanchez MP. 2024. Investigating the impact of paternal age, paternal heat stress, and estimation of semen batch variance on dairy cow phenotype. Gen Sel Evol. https://doi.org/10.1186/s12711-024-00918-2
Fouéré C, Sanchez MP, Boussaha M, Fritz S, Vinet A, Kieffer H, Boichard D, Hoze C. 2024. A large population study to assess the magnitude of prenatal programming in dairy cattle. J Dairy Sci. https://doi.org/10.3168/jds.2023-24051
Fresco S, Boichard D, Lefebvre R, Barbey S, Gaborit M, Fritz S, Martin P. 2024. Correlation of methane production, intensity, and yield with residual feed intake throughout lactation in Holstein cows. Animal. https://doi.org/10.1016/j.animal.2024.101110
Fresco S, Vanlierde A, Boichard D, Lefebvre R, Gaborit M, Bore R, Fritz S, Gengler N, Martin P. 2024. Combining heterogeneous GreenFeed measurements to predict methane emissions from cow milk mid-infrared spectra and phenotypes. Animal. https://doi.org/10.1016/j.animal.2024.101200
Gautier M, Micol T, Camus L, Moazami-Goudarzi K, Naves M, Guéret E, Engelen S, Lemainque A, Colas F, Flori L, Drue T. 2024. Genomic reconstruction of the successful establishment of a feralized bovine population on the subantarctic island of Amsterdam. Molecular Biology and Evolution https://doi.org/10.1093/molbev/msae121
Ivanova E, Hue-Beauvais C, Castille J, Laubier J, Le Guillou S, Aujean E, Lecardonnel J, Lebrun L, Jaffrezic F, Rousseau-Ralliard D, Péchoux C, Letheule M, Foucras G, Charlier M, Le Provost F. 2024. Mutation of SOCS2 induces structural and functional changes in mammary development. Development. GaLac, GiBBS, Ptf https://doi.org/10.1242/dev.202332
Jacques A, Duclos D, Danchin-Burge C,Mercat MJ, Tixier-Boichard M, Restoux G. Assessing the potential of germplasm collections for the management of genetic diversity: the case of the French National Cryobank. Peer Community Journal. https://doi.org/10.24072/pcjournal.369
Jansseune S, Lammers A, van Baal J, Blanc F, Pinard van der Laan MH, Calenge F, Hendriks WH. Diet composition influences probiotic and postbiotic effects on broiler growth and physiology. Poultry Science. https://doi.org/10.1016/j.psj.2024.103650
Jourdain J, Capitan A, Saintilan R, Hozé C, Fouéré C, Fritz S, Boichard D, Barbat A. 2024. Genetic parameters, GWAS and selection perspective on gestation length in 16 French cattle breeds. J Dairy Sci. https://doi.org/10.3168/jds.2024-24736
Kistler T, Brascamp EW, Basso B, Bijma P, Phocas F. 2024. Uncertainty in the mating strategy of honeybees causes bias and unreliability in the estimates of genetic parameters. Gen Sel Evol. https://doi.org/10.1186/s12711-024-00898-3
Kistler T, Kouchner C, Brascamp EW, Mondet F, Vignal A, Basso B, Bijma P, Phocas F. Heritability and correlations for production, handling ease and resilience traits in a French honeybee population. Apidologie https://doi.org/10.1007/s13592-024-01088-2
Larzul C, Estelle J, Borey M, Blanc F, Lemonnier G, Billon Y, Thiam MG, Quinquis B, Galleron N, Jardet D, Lecardonnel J, Plaza Onate F, Rogel-Gaillard C. 2024. Driving gut microbiota enterotypes through host genetics. Microbiome. https://doi.org/10.1186/s40168-024-01827-8
Laubier J, Van De Wiele A, Barboiron A, Laloë D, Saint-Andrieux C, Castille J, Meloni E, Ernst S, Pellerin M, Floriot S, Daniel-Carlier N, Passet B, Merlet J, Verheyden H, Béringue V, Andréoletti O, Houston F, Vilotte J-L, Bourret V, Moazami-Goudarzi K. 2024. Variation in the prion protein gene (PRNP) open reading frame sequence in French cervids. Vet Res. https://doi.org/10.1186/s13567-024-01362-2
Lefevre F, Bojkovskib D, Bou Dagher Kharrat M, Bozzano M, Charvolin-Lemaire E, Hiemstra SJ, Kraigher H, Laloe D, Restoux G, Sharrock S, Sturaro E, van Hintum T, Westergren M, Maxted N, GenRes Bridge Expert Panel. 2024. European genetic resources conservation in arapidly changing world: three existential challengesfor the crop, forest and animal domains in the 21stcentury. Genetic Resources. https://doi.org/10.46265/genresj.REJR689
Librado et al. 2024. Widespread horse-based mobility arose around 2200 bce in Eurasia. Nature. https://doi.org/10.1038/s41586-024-07597-5
MARTIN P., FRIGGENS N.C., VINET A., DOZIAS D., MAUPETIT D., RENAND G., VILLALBA D. 2024. Impact of feed efficiency on young beef animals on adult resilience : from field challenge experiments to modelling approaches. Livestock Science. https://doi.org/10.1016/j.livsci.2024.105558
Mouillet‑Richard S , Gougelet A, Passet B, Brochard C, Le Corre D, Luana Pitasi C, Joubel C, Sroussi M, Gallois C, Lavergne J, Castille J, Vilotte M, Daniel‑Carlier N, Pilati C, de Reyniès A, Djouadi F, Colnot S, André T, Taieb J, Vilotte JL, Romagnolo B, Laurent‑Puig P. 2024. Wnt, glucocorticoid and cellular prion protein cooperate to drive a mesenchymal phenotype with poor prognosis in colon cancer. J Transl Med. https://doi.org/10.1186/s12967-024-05164-0
Nagata E, Rochat T, Lee B-H, Lallias D, Rigaudeau D, Duchaud E. Host specificity and virulence of Flavobacterium psychrophilum: a comparative study in ayu (Plecoglossus altivelis) and rainbow trout (Oncorhynchus mykiss) hosts. Veterinary Research.
Péchoux C, Antigny F, Perros F. 2024. A correlated light and electron microscopy approach to study the subcellular localization of phosphorylated vimentin in human lung tissue. Method Cell Biol. https://doi.org/10.1016/bs.mcb.2024.02.034
Pouil S, Besson M, Phocas F, Aubin J. Assessing the environmental impacts of conventional and organic scenarios of rainbow trout farming in France. Journal of Cleaner Production. https://doi.org/10.1016/j.jclepro.2024.142296
Pouil S, Harté E, Marchand M, Goardon L, Terrenne T, Labbé L, Dupont-Nivet M, Leguen I, Lallias D. 2024. Cold temperature during embryonic development and its influence on responses to acute confinement and hyperthermia challenges in juvenile rainbow trout. Aquaculture. https://doi.org/10.1016/j.aquaculture.2024.741318
Pouil S, Slembrouck J, Wilfart A, Caruso D, Arifin OZ, Favalier N, Samsudin R, Kristanto AH, Aubin J. 2024. The potential of floating macrophytes as feed and phytoremediation resources to improve the environmental performance of giant gourami production in Indonesia: A life cycle assessment. Aquaculture https://doi.org/10.1016/j.aquaculture.2023.740181
Paul K, Restoux G, Phocas F. 2024. Genome-wide detection of positive and balancing signatures of selection shared by four domesticated rainbow trout populations (Oncorhynchus mykiss). Gen Sel Evol. GenAqua, https://doi.org/10.1186/s12711-024-00884-9
Roche J, Griot R, Allal F, Besson M, Haffray P, Patrice P, Phocas F, Vandeputte M. 2024. APIS: an updated parentage assignment software managing triploids induced from diploid parents. G3. https://doi.org/10.1093/g3journal/jkae143
The FarmGTEx PigGTEx Consortium,... Giuffra E... Rocha D, Charles M,... Fang L. 2024. A compendium of genetic regulatory effects across pig tissues. Nature comm. GeMS, G2B, GiBBS https://doi.org/10.1038/s41588-023-01585-7
Vinet A, Mattalia S, Vallée R, Bertrand C, Barbat A, Promp J, Cuyabano BCD, Boichard D. 2024. Effect of temperature-humidity index on the evolution of trade-offs between fertility and production in dairy cattle. Gen Sel Evol. https://doi.org/10.1186/s12711-024-00889-4
2023
Acloque H, Yang J, Theveneau E. 2023. Epithelial-to-mesenchymal plasticity from development to disease: An introduction to the special issue. GENESIS https://doi.org/10.1002/dvg.23581
Chavinskaia L, Labatut J. 2023. Technologies de l’élevage moderne : l’amélioration génétique des bovins. revue-regards-croises-sur-l-economie. https://www.cairn.info/tap-9xzvppgj4o2i1.
Coustard Metayer S, Rossignol C, Collin A, Blanc F, Lallier N, Schouler C, Duval Le Bihan E, Travel A, Lalmanach A-C. 2023 Intestinal avian defensin 2 and robustness of chicks. POULTRY SCIENCE https://doi.org/10.1016/j.psj.2023.103175
Coustham V, Andrieux C, Cerutti C, Collin A, David I, Demars J, Devailly G, Morisson M, Houssier M, Lagarrigue S, Métayer-Coustard S, Mignon-Grasteau S, Panserat S, Petit A, Vitorino Carvalhos A, Zerjal T, Pitel F. 2023. Épigénétique, gènes et environnement : quelle importance pour les pratiques d’élevage et les méthodes de sélection des volailles ? INRAE Prod Anim https://doi.org/10.20870/productions-animales.2023.36.4.7384
El Kamouh M, Brionne A, Sayyari A, Lallais D, Labbé C, Laurent A. 2024. Strengths and limitations of reduced representation bisulfite sequencing (RRBS) in the perspective of DNA methylation analysis in fish: a case‑study on rainbow trout spermatozoa. Fish Physiol Biochem. https://doi.org/10.1007/s10695-024-01326-5
Issa M, Michaudel C, Guinot M, Grauso-Culetto M, Guillon B, Lecardonnel J, Jouneau L, Chapuis C, Bernard H, Hazebrouck S, Castelli F, Fenaille F, Gaultier E, Riviere G, Houdeau E, Adel-Patient K. 2023. Long-term exposure from perinatal life to food-grade TiO2 alters intestinal homeostasis and predisposes to food allergy in young mice. Allergy https://doi.org/10.1111/all.15960
Sebastia C, Folch JM, Ballester M, Estelle J, Passols M, Munoz M, Garcia-Casco JM, Fernandez AI, Castello A, Sanchez A, Crespo-Piazuelo D. 2023. Interrelation between gut microbiota, SCFA, and fatty acid composition in pigs. mSystems https://doi.org/10.1128/msystems.01049-23
Gautier M, Micol T, Camus L, Moazami-Goudarzi K, Naves M, Guéret E, Engelen S, Colas F, Flori L, Druet T. 2023. Genomic reconstruction of the successful establishment of a feralized bovine population on the subantarctic island of Amsterdam. BioRXIV. https://doi.org/10.1101/2023.11.24.568563v1
Guerin H, Courtin P, Guillot A, Pechoux C, Mahony J, van Sinderen D, Kulakauskas S, Cambillau C, Touze T, Chapot-Chartier M-P. 203. Molecular mechanisms underlying the structural diversity of rhamnose-rich cell wall polysaccharides in lactococci. The Journal of biological chemistry https://doi.org/10.1016/j.jbc.2023.105578
Labatut J. 2023. Towards a biosocial turn in management and organization research? Proposals for a paradigm shift. Sage Journals https://doi.org/10.1177/13505084231183034
