Publications

Recent publications

Recent publications

Recent publications

Aboshady H, Jorge-Smeding E, Taussat S, Cantalapiedra-Hijar G. 2024. Development and validation of a model for early prediction of residual feed intake in beef cattle using plasma biomarkers. Animal https://doi.org/10.1016/j.animal.2024.101354  GBOS

Andriuta D, Roussel M, Chene G, Fischer C, Mangin J-F, Dubois B, Vellas B, Pasquier F, Tison F, Blanc F, Hanon O , Paquet C, Gabelle A, Ceccaldi M, Annweiler C, Krolak-Salmon P, David R, Rouch-Leroyer I, Benetos A, Moreaud O, Sellal F, Jalenques I, Vandel P, Bouteloup V, Godefroy O. 2024. The pattern of cortical thickness associated with executive dysfunction in MCI and SCC: The MEMENTO cohort.Revue Neurologique https://doi.org/10.1016/j.neurol.2024.02.394  GeMS

Bortoluzzi C, Restoux G, Rouger R, Desnoues B, Petitjean F, Bosse M, Tixier-Boichard M. 2024. Trends in genome diversity of small populations under a conservation program: a case study of two French chicken breeds.Peer Community Journal.  https://doi.org/10.24072/pcjournal.474 GiBBS

Brulin L, Ducrocq S, Even G, Sanchez M.-P, Martel S, Merlin S, Audebert C, Croiseau P, Estelle J. 2024. Bifidobacterium abundance in the faecal microbiota is strongly associated with milk traits in dairy cattle. Animal https://doi.org/10.1016/j.animal.2024.101243  GeMS, GBOS

Couty N, Estienne A, Le Lay S, Rame C, Chevaleyre C, Allard-Vannier E, Péchoux C, Guerif F, Vasseur C, Aboulouard S, Salzet M, Dupont J, Froment P. 2024. Human ovarian extracellular vesicles proteome from polycystic ovary syndrome patients associate with follicular development alterations. FASEB J https://doi.org/10.1096/fj.202400521RR  Ptf

Dagenais P, Jahanbakhsh E, Capitan A, Jammes H, Reynaud K, De Juan Romero C, Borrell V, Milinkovitch MC. 2024. Mechanical positional information guides the self-organized development of a polygonal network of creases in the skin of mammalian noses. Current Bio https://doi.org/10.1016/j.cub.2024.09.055  GBOS

Daniel-Carlier N, Castille J, Passet B, Vilotte M, Le Danvic C, Jaffrezic F, Beauvallet C, Péchoux C, Capitan A, Vilotte J-L. 2024 Targeted mutation and inactivation of the kinesin light chain 3 protein-encoding gene have no impact on mouse fertility. Biology of Reproduction https://doi.org/10.1093/biolre/ioad131  EFISA, GiBBS, pltf, GBoS

Degalez F, Charles M, Foissac S, Zhou H, Guan D , Fang L, Klopp C, Allain C, Lagoutte L, Lecerf F, Acloque H, Giuffra E, Pitel F, Lagarrigue S. 2024. Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues. Scientif Rep https://doi.org/10.1038/s41598-024-56705-y  GiBBS, EFISA, GeMS

Erjavec E, Angée C, Hadjadj D, Passet B, David P, Kostic C, Dodé E , Zanlonghi X, Cagnard N, Nedelec B, Crippa S , Bole-Feysot C, Zarhrate M, Creuzet S, Castille J, Vilotte J-L, Calvas P, Plaisancié J, Chassaing N, KaplanJ, Rozet J-M, Fares Taie L. 2024. Congenital microcoria deletion in mouse links Sox21 dysregulation to disease and suggests a role for TGFB2 in glaucoma and myopia    American Journal of Human Genetics. https://doi.org/10.1016/j.ajhg.2024.08.019  EFISA

Finot L, Hue-Beauvais C, Aujean E, Le Provost F, Chanat E. 2024. Sorted stem/progenitor epithelial cells of pubertal bovine mammary gland present limited potential to reconstitute an organised mammary epithelium after transplantation. Plos ONE https://doi.org/10.1371/journal.pone.0296614  EFISA

Fujiwara-Nagata E, Rochat T, Lee B-H, Lallias D, Rigaudeau D, Duchaud E. 2024.     Host specificity and virulence of Flavobacterium psychrophilum: a comparative study in ayu (Plecoglossus altivelis) and rainbow trout (Oncorhynchus mykiss) hosts. Vet Res https://doi.org/10.1186/s13567-024-01326-6  guppie

Gindri M, Ithurbide M, Pires J, Rupp R, Puillet L, Friggens NC. 2024. Responses of selected plasma metabolites to a two-day nutritional challenge of goats divergently selected for functional longevity. J Dairy Sci https://doi.org/10.3168/jds.2023-23908  Gems

Gmel A, Ricard A, Gerber V, Neuditschko M. 2024. Population structure and genomic diversity of the Einsiedler horse. Animal Genetics. https://doi.org/10.1111/age.13421  BIGE

Guérin H, Courtin P, Guillot A, Péchoux C, Mahony J, van Sinderen D, Kulakauskas S, Cambillau C, Touzé T, Chapot-Chartier M-P. 2024. Molecular mechanisms underlying the structural diversity of rhamnose-rich cell wall polysaccharides in lactococci. Journal of Biological Chemistry https://doi.org/10.1016/j.jbc.2023.105578  Ptf

Issa M, Michaudel C, Guinot M, Grauso M, Guillon B, Lecardonnel J, Jouneau L, Chapuis C, Bernard H, Hazebrouck S, Castelli F, Fenaille F, Gaultier E, Rivière G, Houdeau E, Adel-Patient K. 2024. Long-term exposure from perinatal life to food-grade TiO2 alters intestinal homeostasis and predisposes to food allergy in young mice. Allergy https://doi.org/10.1111/all.15960  Ptf

Kleij L, Bruder E, Raoux-Barbot D, Lejal N, Nevers Q, Deloizy C, da Costa B, Legrand L, Barrey E, Chenal A, Pronost S, Delmas B, Dhorne-Pollet S. 2024. Genomic characterization of equine influenza A subtype H3N8 viruses by long read sequencing and functional analyses of the PB1-F2 virulence factor of A/equine/Paris/1/2018. Vet Res https://doi.org/10.1186/s13567-024-01289-8  BIGE

Lecoeur A, Blanc F, Gourichon D, Bruneau N, Burlot T, Pinard-van der Laan M-H, Calenge F. 2024. Host genetics drives differences in cecal microbiota composition and immune traits of laying hens raised in the same environment. Poultry Science https://doi.org/10.1016/j.psj.2024.103609  Gems

Le Ribeuz H, Saint-Martin Willer A, Chevalier B, Sancho M, Masson B, Eyries M, Jung V, Guerrera IC, Dutheil M, El Jekmek K, Laubry L, Carpentier G, Perez-Vizcaino F, Tu L, Guignabert C, Chaumais M-C, Péchoux C, Humbert M, Hinzpeter A, Mercier O, Capuano V, Montani D , Antigny F. 2024. Role of KCNK3 Dysfunction in Dasatinib-associated Pulmonary Arterial Hypertension and Endothelial Cell Dysfunction. American Journal of Respiratory Cell and Molecular Biology. https://doi.org/10.1165/rcmb.2023-0185OC  Ptf

Métayer Coustard S, Rossignol C, Collin A, Blanc F, Lallier N, Schouler C, Le Bihan-Duval E, Travel A, Lalmanach A-C. 2024. Intestinal avian defensin 2 and robustness of chicks. Poultry Science https://doi.org/10.1016/j.psj.2023.103175  Gems

Schmidt Kjølner Hansen S, Krautz R, Rago D, Havelund J, Stigliani A, Færgeman NJ, Prézelin A, Rivière J, Couturier-Tarrade A, Akimov V, Blagoev B, Elfving B, Neess D, Vogel U, Khodosevich K, Hougaard KS, Sandelin A. 2024. Pulmonary maternal immune activation does not cross the placenta but leads to fetal metabolic adaptation. Nature Comm https://doi.org/10.1038/s41467-024-48492-x  Ptf

Stephansen RB, Martin P, Manzanilla-Pech CIV, Giagnoni G, Madsen MD, Ducrocq V, Weisbjerg MR, Lassen J, Friggens NC. 2024. Improving residual feed intake modelling in the context of nutritional- and genetic studies for dairy cattle. Animal https://doi.org/10.1016/j.animal.2024.101268  Gbos

Stojak J, Rocha D, Mörke C, Kühn C, Blanquet V, Taniguchi H. 2024. Establishment of a cloning-free CRISPR/Cas9 protocol to generate large deletions in the bovine MDBK cell line. Journal of Applied Genetics. https://doi.org/10.1007/s13353-024-00846-3  Gbos

Teboul L, … Vilotte J-L, … Pavlovic G. 2024. Improving laboratory animal genetic reporting: LAG-R guidelines. Nature Comm https://doi.org/10.1038/s41467-024-49439-y  EFISA

Vu Manh T-P, Gouin C, de Wolf J, Jouneau L, Pascale F, Bevilacqua C, Ar Gouilh M, da Costa B, Chevalier C, Glorion M, Hannouche L, Urien C, Estephan J, Magnan A, Le Guen M, Marquant Q, Descamps D, Dalod M, Schwartz-Cornil I, Sage E. 2024. SARS-CoV2 infection in whole lung primarily targets macrophages that display subset-specific responses. Cellular and Molecular Life Sciences https://doi.org/10.1007/s00018-024-05322-z  Ptf

2024

Basso B, Kistler T, Phocas F. 2024. Genetic parameters, trends, and inbreeding in a honeybee breeding program for royal jelly production and behavioral traits. Apidologie. https://doi.org/10.1007/s13592-023-01055-3 

Bédère N, Dupont J, Baumard Y, Staub C, Gourichon D, Frédéric E, Le Roy P, Zerjal T. Genetic background of body reserves in laying hens through backfat thickness phenotyping. Peer Community Journal. https://doi.org/10.24072/pcjournal.412  

Ben Braiek M, Moreno-Romieux C, Andre C, Astruc JM, Bardou P, Bordes A, Debat F, Fidelle F, Granado-Tajada I, Hoze C, Plisson-Petit F, Rivemale F, Sarry J, Tadi N, Woloszyn F, Fabre S. 2024. Searching for homozygous haplotype deficiency in Manech Tête Rousse dairy sheep revealed a nonsense variant in the MMUT gene affecting newborn lamb viability. Genet Sel Evol. https://doi.org/10.1186/s12711-024-00886-7 

BEN-JEMAA S, BOUSSAHA M, MANDONNET N, BARDOU P, NAVES M. 2024. Uncovering structural variants in Creole cattle from Guadeloupe and their impact on environmental adaptation through whole genome sequencing. PlosOne https://doi.org/10.1371/journal.pone.0309411  

Bernard L, Hurtaud C, Larroque H, Allain C, Parisot S, Cebo C. Feed restriction affects milk performances and decreases milk lipolysis in dairy ewes. Animal. https://doi.org/10.1016/j.animal.2024.101181 

Bernard M, Lecoeur A, Coville J-L, Bruneau N, Jardet D, Lagarrigue S, Meynadier A, Calenge F, Pascal G, Zerjal T. 2024. Relationship between feed efficiency and gut microbiota in laying chickens under contrasting feeding conditions. Scientif Rep 

Besnard F., Guintard A., Grohs C., Guzylack-Piriou L., Cano M., Escouflaire C., Hoze C., Leclerc H., Buronfosse T., Dutheil L., Jourdain J., Barbat A., Fritz S., Deloche M.C., Remot A., Gausseres B., Clement A., Bouchier M., Contat E., Relun A., Plassard V., Riviere J., Pechoux C., Vilotte M., Eche C., Kuchly C., Charles M., Boulling A., Viard G., Minery S., Barbey S., Birbes C., Danchin-Burge C., Launay F., Mattalia S., Allais-Bonnet A., Ravary B., Millemann Y., Guatteo R., Klopp C., Gaspin C., Iampietro C., Donnadieu C., Milan D., Arcangioli M.A., Boussaha M., Foucras G., Boichard D., Capitan A. Massive detection of cryptic recessive genetic defects in cattle mining millions of life histories ? Genome Biol. 

Bessa Ducrot C, Barrio MB, Boissy A, Charrier F, Even S, Mormède P, Petit S, Pinard-van der laan M-H, Schelcher F, Casabianca F, Ducos A, Foucras G, Guatteo R, Peyraud J-L, Vayssier-Taussat M, Veysset P,Friggens NC,Fernandez X. 2024. Animal Board Invited Review: Improving animal health and welfare in the transition of livestock farming systems: towards social acceptability and sustainability. Animal. https://doi.org/10.1016/j.animal.2024.101100 

Bessa Ferraira VH, Seressia J, Lansade L, Même N, Bernard J, Pinard-van der Laan M-H, Calenge F, Lecoeur A, Calandreau L, Dutour M. 2024. Discrimination of familiar and unfamiliar human voices is independent of prolonged human-animal interaction in domestic chicks. Applied Animal Behaviour Science. https://doi.org/10.1016/j.applanim.2023.106138 

Bortoluzzi C, Restoux G, Rouger R, Desnoues B, Petitjean F, Bosse M, Tixier-Boichard M. 2024. Trends in genome diversity of small populations under a conservation program: a case study of two French chicken breeds. bioRXiv https://doi.org/10.1101/2024.02.22.581528  

Bourdon G, Chevaleyre C, Estienne A, Péchoux C, Bourgeais J, Hérault O, Ba M, Ramé C, Dupont J, Ducluzeau PH, Froment P. The hepatokine FGF21 stopped lipogenesis and reduced testosterone production in mLTC-1 Leydig Cell Line. Molecular and Cellular Endocrinology. https://doi.org/10.1016/j.mce.2024.112350 

BRULIN L., DUCROCQ S., ESTELLE J., EVEN G., MARTEL S., MERLIN S., AUDEBERT C., CROISEAU P., SANCHEZ M.P. 2024. The fecal microbiota of Holstein cows is heritable and genetically correlated to dairy performances. JDS https://doi.org/10.3168/jds.2024-25003 

Brulin L, Ducrocq S, Even G, Sanchez M.-P, Martel S, Merlin S, Audebert C, Croiseau P, Estelle J. 2024. Characterization of bovine vaginal microbiota and its relationship with host fertility, health and production. Scientif Rep. https://doi.org/10.1038/s41598-024-69715-7  

CAI Z, ISO-TOURU T., SANCHEZ M.-P., KADRI N., BOUWMAN A.C., CHITNEEDI P.K., MACLEOD I., VANDER JAGT C.J., CHAMBERLAIN A.J., GREDLER-GRANDL B., SPENGELER M., LUND M.S., BOICHARD D., KÜHN C., PAUSCH H., VILKKI J., SAHANA G. 2024. Meta-analysis of genome-wide association studies from six dairy cattle breeds reveals biologically relevant candidate genes for mastitis resistance. Gen Sel Evol  https://doi.org/10.1186/s12711-024-00920-8  

Canario L, Bedere N, Vandeputte M, Boichard D, Raoul J, Larzul C. 2024. Quelles génétiques pour les systèmes d’élevages certifiés en agriculture biologique ? INRAE Productions Animales. https://doi.org/10.20870/productions-animales.2024.37.2.8177  

Chitneedi PK, Hadlich F, Moreira GCM, Espinosa-Carrasco J, Li CX, Plastow G, Fischer D, Charlier C, Rocha D, Chamberlain AJ, Kuehn C. eQTL-Detect: nextflow-based pipeline for eQTL detection in modular format with sharable and parallelizable scripts. Nar Genomics Bioinformatics. https://doi.org/10.1093/nargab/lqae122  

Clota F, Goikoetxea A, Vergnet A, Blanc MO, Lallement S, Ruelle F, Leitwein M, Allal F, Geffroy B, Vandeputte M. 2024. Post-larval exposure to warm temperature enhances female ratio, while starvation and photoperiod do not: The case of European seabass, Dicentrarchus labrax. Aquaculture. GenAqua https://doi.org/10.1016/j.aquaculture.2024.740758

Collin A, Coustham V, Tona JK, Tesseraud S, Mignon-Grasteau S, Méda B, Vitorino Carvalho A, Guyot Y, Lagarrigue S, Pitel F, Zerjal T. Face au changement climatique, quelles stratégies d’atténuation et d’adaptation pour les productions avicoles ? INRAE Productions Animales. https://doi.org/10.20870/productions-animales.2023.36.4.7384 

Corbeau J, Grohs C, Jourdain J, Boussaha M, Besnard F, Barbat A, Plassard V, Rivière J, Hamelin C, Mortier J, Boichard D, Guatteo R, Capitan A. A recurrent de novo missense mutation of COL1A1 causes Osteogenesis Imperfecta type II and preterm delivery in Normande Cattle. Genet Sel Evol https://doi.org/10.1186/s12711-024-00909-3 

Coste V, Sellem E, Marthey S, Hoze C, Bonnet A, Schibler L, Kieffer H, Jaffrezic F. 2024. Multi-omics data integration for the identification of predictive biomarkers for bull fertility. PlosOne. G2B, GiBBS https://doi.org/10.1371/journal.pone.0298623 

Cuyabano BCD, Boichard D, Gondro C.2024. Expected values for the accuracy of predicted breeding values accounting for genetic differences between reference and target populations. Genet Sel Evol. https://doi.org/10.1186/s12711-024-00876-9  

Débare H, Blanc F, Piton G, Leplat JJ, Vincent‑Naulleau S, Rivière J, Vilotte M, Marthey S, Lecardonnel J, Coville JL, Estellé J, Rau A,  Bourneuf E, Egidy G. Malignant features of minipig melanomas prior to spontaneous regression. Scientif Rep. https://doi.org/10.1038/s41598-024-59741-w 

Degrelle SA, Liu F, Laloe D, Richard C, Le Bourhis D, Rossignol MN, Hue I. 2024. Understanding bovine embryo elongation: a transcriptomic study of trophoblastic vesicles. Front Physiol https://doi.org/10.3389/fphys.2024.1331098  

Denis E, Grohs C, Donnadieu C, Iampietro C. 2024. Validated DNA isolation method ensuring successful long-read sequencing of cattle semen genome. PlosOne. https://doi.org/10.1371/journal.pone.0308011 

De Wolf J, Gouin C, Jouneau L, Glorion M, Premachandra A, Pascale F, Huriet M, Estephan J, Leplat JJ, Egidy G, Richard C, Gelin V, Urien C, Roux A, Le Guen M, Schwartz-Cornil I, Sage E. 2024. Prolonged dialysis during ex vivo lung perfusion promotes inflammatory responses. Front Immunol https://doi.org/10.3389/fimmu.2024.1365964  

Dhorne-Pollet S, Barrey E. 2024. Le cheval Curly, un cheval aux poils frisés dit "hypoallergénique". Le Nouveau Praticien Vét équine. BIGE https://doi.org/10.1051/npvequi/2024006 

Dhorne-Pollet S, Barrey E. 2024. Les gènes de la taille chez les chevaux : application à la production de poneys de sport. Le Nouveau Praticien Vét équine. BIGE https://doi.org/10.1051/npvequi/2024009

Dufour A, Kurilo C, Stöckl JB, Laloë D, Bailly Y, Manceau P, Martins F, Turhan AG, Ferchaud S, Pain B, Fröhlich T, Foissac S, Artus J,  Acloque H. 2024. Cell specification and functional interactions in the pig blastocyst inferred from single cell transcriptomics and uterine fluids proteomics. Genomics. https://doi.org/10.1016/j.ygeno.2023.110780  

Ernst S, Piestrzyńska-Kajtoch A, Gethmann J, Natonek-Wiśniewska M, Sadeghi B, Polak MP, Keller M, Gavier-Widén D, Moazami-Goudarzi K, Houston F, Groschup MH, Fast C. 2024 Prion protein gene (PRNP) variation in German and Danish cervids. Vet Res. https://doi.org/10.1186/s13567-024-01340-8  

Fouéré C, Hozé C, Besnard F, Boussaha M, Boichard D, Sanchez MP. 2024. Investigating the impact of paternal age, paternal heat stress, and estimation of semen batch variance on dairy cow phenotype. Gen Sel Evol. https://doi.org/10.1186/s12711-024-00918-2  

Fouéré C, Sanchez MP, Boussaha M, Fritz S, Vinet A, Kieffer H, Boichard D, Hoze C. 2024. A large population study to assess the magnitude of prenatal programming in dairy cattle. J Dairy Sci. https://doi.org/10.3168/jds.2023-24051  

Fresco S, Boichard D, Fritz S, Lefebvre R, Barbey S, Gaborit M,  Martin P. 2024. Comparison of methane production, intensity, and yield throughout lactation in Holstein cows. J Dairy Sci https://doi.org/10.3168/jds.2022-22855  

Fresco S., Boichard D., Fritz S., Martin P. Genetic parameters for methane production, intensity, and yield predicted from milk mid-infrared spectra throughout lactation in Holstein dairy cows. J Dairy Sci https://doi.org/10.3168/jds.2024-25231

Fresco S, Boichard D, Lefebvre R, Barbey S, Gaborit M, Fritz S, Martin P. 2024. Correlation of methane production, intensity, and yield with residual feed intake throughout lactation in Holstein cows. Animal.   https://doi.org/10.1016/j.animal.2024.101110

Fresco S, Vanlierde A, Boichard D, Lefebvre R, Gaborit M, Bore R, Fritz S, Gengler N, Martin P. 2024. Combining heterogeneous GreenFeed measurements to predict methane emissions from cow milk mid-infrared spectra and phenotypes. Animal. https://doi.org/10.1016/j.animal.2024.101200  

Gautier M, Micol T, Camus L, Moazami-Goudarzi K, Naves M, Guéret E, Engelen S, Lemainque A, Colas F, Flori L, Drue T. 2024. Genomic reconstruction of the successful establishment of a feralized bovine population on the subantarctic island of Amsterdam. Molecular Biology and Evolution https://doi.org/10.1093/molbev/msae121  

Ghieh F, Passet B, Poumerol E, Castille J, Calvel P, Vilotte JL, Sellem E, Jouneau L, Mambu-Mambueni H, Garchon HE, Pailhoux E, Vialard F, Mandon-Pépin B    A partial deletion within the meiosis-specific sporulation domain SPO22 of Tex11 is not associated with infertility in mice. Plos One https://doi.org10.1371/journal.pone.0309974  

Girardie O, Laloe D, Bonneau M, Billon Y, Bailly J, David I, Canario L. Primiparous sow behaviour on the day of farrowing as one of the primary contributors to the growth of piglets in early lactation. Scientif Rep. https://doi.org/10.1038/s41598-024-69358-8 

Ivanova E, Hue-Beauvais C, Castille J, Laubier J, Le Guillou S, Aujean E, Lecardonnel J, Lebrun L, Jaffrezic F, Rousseau-Ralliard D, Péchoux C, Letheule M, Foucras G, Charlier M, Le Provost F. 2024. Mutation of SOCS2 induces structural and functional changes in mammary development. Development. GaLac, GiBBS, Ptf https://doi.org/10.1242/dev.202332

Jacques A, Duclos D, Danchin-Burge C,Mercat MJ, Tixier-Boichard M, Restoux G. Assessing the potential of germplasm collections for the management of genetic diversity: the case of the French National Cryobank. Peer Community Journal. https://doi.org/10.24072/pcjournal.369 

Jansseune S, Blanc F, Lammers A, van Baal J, Bruneau N, Pinard van der Laan MH, Hendriks WH, Calenge F. 2024. Microbiota but not immune modulation by a pro- and postbiotic was associated with the diet-additive interaction in broilers. Poultry Science. https://doi.org/10.1016/j.psj.2024.104184  

Jansseune S, Lammers A, van Baal J, Blanc F, Pinard van der Laan MH, Calenge F, Hendriks WH. Diet composition influences probiotic and postbiotic effects on broiler growth and physiology. Poultry Science. https://doi.org/10.1016/j.psj.2024.103650 

Jourdain J, Capitan A, Saintilan R, Hozé C, Fouéré C, Fritz S, Boichard D, Barbat A. 2024. Genetic parameters, GWAS and selection perspective on gestation length in 16 French cattle breeds. J Dairy Sci. https://doi.org/10.3168/jds.2024-24736  

Kistler T, Brascamp EW, Basso B, Bijma P, Phocas F. 2024. Uncertainty in the mating strategy of honeybees causes bias and unreliability in the estimates of genetic parameters. Gen Sel Evol. https://doi.org/10.1186/s12711-024-00898-3 

Kistler T, Kouchner C, Brascamp EW, Mondet F, Vignal A, Basso B, Bijma P, Phocas F. Heritability and correlations for production, handling ease and resilience traits in a French honeybee population. Apidologie https://doi.org/10.1007/s13592-024-01088-2  

Larzul C, Estelle J, Borey M, Blanc F, Lemonnier G, Billon Y, Thiam MG, Quinquis B, Galleron N, Jardet D, Lecardonnel J, Plaza Onate F, Rogel-Gaillard C. 2024.  Driving gut microbiota enterotypes through host genetics. Microbiome. https://doi.org/10.1186/s40168-024-01827-8 

Laubier J, Van De Wiele A, Barboiron A, Laloë D, Saint-Andrieux C, Castille J, Meloni E, Ernst S, Pellerin M, Floriot S, Daniel-Carlier N, Passet B, Merlet J, Verheyden H, Béringue V, Andréoletti O, Houston F, Vilotte J-L, Bourret V, Moazami-Goudarzi K. 2024. Variation in the prion protein gene (PRNP) open reading frame sequence in French cervids. Vet Res. https://doi.org/10.1186/s13567-024-01362-2 

Lefevre F, Bojkovskib D, Bou Dagher Kharrat M, Bozzano M, Charvolin-Lemaire E, Hiemstra SJ, Kraigher H, Laloe D, Restoux G, Sharrock S, Sturaro E, van Hintum T, Westergren M, Maxted N, GenRes Bridge Expert Panel. 2024. European genetic resources conservation in arapidly changing world: three existential challengesfor the crop, forest and animal domains in the 21stcentury. Genetic Resources. https://doi.org/10.46265/genresj.REJR689

Lefevre F, Bugeon J, Goardon L, Kernéis T, Labbé L, Panserat S, Médale F, Quillet E. Seven generations of selection for muscle fat content greatly affect rainbow trout flesh quality and muscle fiber size. Aquaculture reports. https://doi.org/10.1016/j.aqrep.2024.102343  

Leroux C, Faulconnier Y, Bes S, German B, Mills DA, Le Provost F, Le Guillou S    Exploration of microRNAs in butter and their potential influence on human health    Intern Dairy Journal. https://doi.org/10.1016/j.idairyj.2024.106095  

Librado et al. 2024.  Widespread horse-based mobility arose around 2200 bce in Eurasia. Nature. https://doi.org/10.1038/s41586-024-07597-5  

MARTIN P., FRIGGENS N.C., VINET A., DOZIAS D., MAUPETIT D., RENAND G., VILLALBA D. 2024. Impact of feed efficiency on young beef animals on adult resilience : from field challenge experiments to modelling approaches. Livestock Science. https://doi.org/10.1016/j.livsci.2024.105558  

Mouillet‑Richard S , Gougelet A, Passet B, Brochard C, Le Corre D, Luana Pitasi C, Joubel C, Sroussi M, Gallois C, Lavergne J, Castille J, Vilotte M, Daniel‑Carlier N, Pilati C, de Reyniès A, Djouadi F, Colnot S, André T, Taieb J, Vilotte JL, Romagnolo B, Laurent‑Puig P. 2024. Wnt, glucocorticoid and cellular prion protein cooperate to drive a mesenchymal phenotype with poor prognosis in colon cancer. J Transl Med. https://doi.org/10.1186/s12967-024-05164-0  

Nagata E, Rochat T, Lee B-H, Lallias D, Rigaudeau D, Duchaud E. Host specificity and virulence of Flavobacterium psychrophilum: a comparative study in ayu (Plecoglossus altivelis) and rainbow trout (Oncorhynchus mykiss) hosts. Veterinary Research.

Péchoux C, Antigny F, Perros F. 2024. A correlated light and electron microscopy approach to study the subcellular localization of phosphorylated vimentin in human lung tissue. Method Cell Biol. https://doi.org/10.1016/bs.mcb.2024.02.034 

Poncet M, Féménia M, Pierre C, Charles M, Capitan A, Boulling A, Rocha D. 2024. Nuclear sequences of mitochondrial origin in domestic yak Scientif Rep. https://doi.org/10.1038/s41598-024-61147-7  

Pouil S, Besson M, Phocas F, Aubin J. Assessing the environmental impacts of conventional and organic scenarios of rainbow trout farming in France. Journal of Cleaner Production. https://doi.org/10.1016/j.jclepro.2024.142296 

Pouil S, Harté E, Marchand M, Goardon L, Terrenne T, Labbé L, Dupont-Nivet M, Leguen I, Lallias D. 2024. Cold temperature during embryonic development and its influence on responses to acute confinement and hyperthermia challenges in juvenile rainbow trout. Aquaculture. https://doi.org/10.1016/j.aquaculture.2024.741318  

Pouil S, Slembrouck J, Wilfart A, Caruso D, Arifin OZ, Favalier N, Samsudin R, Kristanto AH, Aubin J. 2024. The potential of floating macrophytes as feed and phytoremediation resources to improve the environmental performance of giant gourami production in Indonesia: A life cycle  assessment.  Aquaculture   https://doi.org/10.1016/j.aquaculture.2023.740181 

Paul K, Restoux G, Phocas F. 2024. Genome-wide detection of positive and balancing signatures of selection shared by four domesticated rainbow trout populations (Oncorhynchus mykiss). Gen Sel Evol. GenAqua, https://doi.org/10.1186/s12711-024-00884-9    

Roche J, Besson M, Allal F,  Haffray P, Patrice P, Vandeputte M, Phocas F. 2024. GenoTriplo: A SNP genotype calling method for triploids. 2024. Plos Comp Biol. https://doi.org/10.1371/journal.pcbi.1012483  

Roche J, Griot R, Allal F, Besson M, Haffray P, Patrice P, Phocas F, Vandeputte M. 2024. APIS: an updated parentage assignment software managing triploids induced from diploid parents. G3. https://doi.org/10.1093/g3journal/jkae143  

The FarmGTEx PigGTEx Consortium,... Giuffra E... Rocha D, Charles M,... Fang L. 2024.    A compendium of genetic regulatory effects across pig tissues. Nature comm. GeMS, G2B, GiBBS https://doi.org/10.1038/s41588-023-01585-7 

Vinet A., Fouere C., Cuyabano B.C.D., Mattalia S., Vallée R., Barbat A., Bertrand C., Hoze C., Boichard D. Long-lasting effects of in utero heat stress on subsequent performances of heifers and primiparous cows. J Dairy Sci. https://doi.org/10.3168/jds.2024-25168 

Vinet A, Mattalia S, Vallée R, Bertrand C, Barbat A, Promp J, Cuyabano BCD, Boichard D. 2024. Effect of temperature-humidity index on the evolution of trade-offs between fertility and production in dairy cattle. Gen Sel Evol. https://doi.org/10.1186/s12711-024-00889-4

2023

Acloque H, Yang J, Theveneau E. 2023. Epithelial-to-mesenchymal plasticity from development to disease: An introduction to the special issue. GENESIS https://doi.org/10.1002/dvg.23581 

Chavinskaia L, Labatut J. 2023. Technologies de l’élevage moderne : l’amélioration génétique des bovins. revue-regards-croises-sur-l-economie. https://www.cairn.info/tap-9xzvppgj4o2i1

Coustard Metayer S, Rossignol C, Collin A, Blanc F, Lallier N, Schouler C, Duval Le Bihan E, Travel A, Lalmanach A-C. 2023 Intestinal avian defensin 2 and robustness of chicks. POULTRY SCIENCE https://doi.org/10.1016/j.psj.2023.103175 

Coustham V, Andrieux C, Cerutti C, Collin A, David I, Demars J, Devailly G, Morisson M, Houssier M, Lagarrigue S, Métayer-Coustard S, Mignon-Grasteau S, Panserat S, Petit A, Vitorino Carvalhos A, Zerjal T, Pitel F. 2023. Épigénétique, gènes et environnement : quelle importance pour les pratiques d’élevage et les méthodes de sélection des volailles ? INRAE Prod Anim  https://doi.org/10.20870/productions-animales.2023.36.4.7384 

El Kamouh M, Brionne A, Sayyari A, Lallais D, Labbé C, Laurent A. 2024. Strengths and limitations of reduced representation bisulfite sequencing (RRBS) in the perspective of DNA methylation analysis in fish: a case‑study on rainbow trout spermatozoa. Fish Physiol Biochem. https://doi.org/10.1007/s10695-024-01326-5    

Issa M, Michaudel C, Guinot M, Grauso-Culetto M, Guillon B, Lecardonnel J, Jouneau L, Chapuis C, Bernard H, Hazebrouck S, Castelli F, Fenaille F, Gaultier E, Riviere G, Houdeau E, Adel-Patient K. 2023. Long-term exposure from perinatal life to food-grade TiO2 alters intestinal homeostasis and predisposes to food allergy in young mice. Allergy https://doi.org/10.1111/all.15960    

Sebastia C, Folch JM, Ballester M, Estelle J, Passols M, Munoz M, Garcia-Casco JM, Fernandez AI, Castello A, Sanchez A, Crespo-Piazuelo D. 2023. Interrelation between gut microbiota, SCFA, and fatty acid composition in pigs. mSystems https://doi.org/10.1128/msystems.01049-23 

Gautier M, Micol T, Camus L, Moazami-Goudarzi K, Naves M, Guéret E, Engelen S, Colas F, Flori L, Druet T. 2023. Genomic reconstruction of the successful establishment of a feralized bovine population on the subantarctic island of Amsterdam. BioRXIV. https://doi.org/10.1101/2023.11.24.568563v1 

Guerin H, Courtin P, Guillot A, Pechoux C, Mahony J, van Sinderen D, Kulakauskas S, Cambillau C, Touze T, Chapot-Chartier M-P. 203. Molecular mechanisms underlying the structural diversity of rhamnose-rich cell wall polysaccharides in lactococci. The Journal of biological chemistry https://doi.org/10.1016/j.jbc.2023.105578    

Labatut J. 2023. Towards a biosocial turn in management and organization research? Proposals for a paradigm shift. Sage Journals    https://doi.org/10.1177/13505084231183034 

In this folder

List of GABI Unit publications in 2023