GABI Publications in 2025

List of GABI Unit publications in 2025

Acloque H, Yang J, Theveneau E. Epithelial-to-mesenchymal plasticity from development to disease: An introduction to the special issue. Genesis. https://doi.org/10.1002/dvg.23581 

Bernard L, Delosière M, Hurtaud C, Imbert A, Viala D, Cebo C, Bonnet M    Polar lipids and proteins in milk fat globule membranes as players in spontaneous lipolysis in cow's milk. Food Chemistry. https://doi.org/10.1016/j.foodchem.2024.142628  

Bernard L, C. Hurtaud, H. Larroque, P. Iommelli, T. Fassier, A. Rau, C. Cebo. Feed restriction has no effect on milk lipolysis, although it results in a marked reduction in milk lipoprotein lipase activity in dairy goats. Small Ruminant Research. GiBBS https://doi.org/10.1016/j.smallrumres.2025.107649

Blanc F, Kernéis T, Colon F, Bideau M, Rigaudeau D, Bruneau N, Marchand M, Leguen I, Pouil S. Growth, metabolic, and immune responses of lean and fat rainbow trout lines during a starvation-refeeding cycle. Aquaculture. https://doi.org/10.1016/j.aquaculture.2025.743132 

Boucard A-S, Kulakauskas S, Alazzaz J, Chaouch S, Mammeri M, Millan-Oropez A, Machado C, Henry C, Péchoux C, Richly H, Gassel M, Langella P, Polack B, Florent I, Bermúdez-Humarán LG. Isolation of derivatives from the food-grade probiotic Lactobacillus johnsonii. Gut Microbes. https://doi.org/10.1080/19490976.2025.2474149 

Boussaha M., Eché C., Klopp C., Grohs C., Milhes M., Suin A., Bulach T., Fourdin R., Faraut T., Kuchly C., Fritz S., Vernette C., Naji M., Sorin V., Capitan A., Gaspin C., Milan D., Boichard D., Iampietro C., Donnadieu C. Whole genome short read data from 567 bulls of 14 breeds provides insight into genetic diversity of French cattle. Data in brief https://doi.org/10.1016/j.dib.2025.112049 

Calzuola S T, Malet-Villemagne J, Pinamonti D, Rizzotto F, Henry C, Pechaux C, Blonde JB, Roy E, Manzano M, Lakisic G, Truchet S, Vidic J. Assessing Campylobacter jejuni Extracellular Vesicle-Host Interaction Using a Microfluidic Platform with Caco-2 Spheroides-on-Chip. ACS biomaterials science & engineering. https://doi.org/10.1021/acsbiomaterials.5c00750

Correa F, Luise D, Palladino G, Estellé J, Turroni S, Scicchitano D, Babbi G, Rampelli S, Candela M, Martelli PL, Stefanelli C, Perez-Calvo E, Trevisi P. Early antimicrobial regimen shapes gut microbiota and health trajectories in pigs: a longitudinal study from weaning to finishing. Anim Microbiome. https://doi.org/10.1186/s42523-025-00477-x 

Delpech JC, Yeh H, Kalavai SV, You Y, Ruan Z, Touch N, Hersh S, Monguillon P, Johnson WE, Rau A, Madore C, Ikezu T, Ikezu S. Se1 specific correction of maternal inflammation-induced behavioral abnormalities by the inhibition of colony-stimulating factor 1 receptor. Brain Behav Immun GiBBS https://doi.org/10.1080/18280511.2025.2596846

Dufour A, Heydari-Olya A, Foulon S, Réda C, Mokhtari A, Faivre V, Hua J, Bokobza C, Griffiths AD, Nghe P, Gressens P, Delahaye-Duriez A, Van Steenwinckel J. Neonatal inflammation impairs developmentally-associated microglia and promotes a highly reactive microglial subset. Brain, Behavior, and Immunity. https://doi.org/10.1016/j.bbi.2024.09.019    

Fang L…. Rocha D, Giuffra E, ... The Farm Animal Genotype–Tissue Expression (FarmGTEx) Project. Nature Genetics. https://doi.org/10.1038/s41588-025-02121-5  

Ferreira VHB, Seressia J, Même N, Bernard J, Pinard-van der Laan MH, Calenge F, Lecoeur A, Hedlund L, Jensen P, Guesdon V, Calandreau L. Early and late cognitive and behavioral aspects associated with range use in free-range laying hens (Gallus gallus domesticus). Poultry science https://doi.org/10.1016/j.psj.2024.103813

Freisa M, Mun Man H, Le Guillou S, Laubier J, Le Provost F, Bouville D, Le Potier I, Thouin L, Gamby J. Label‐Free Electrochemical Microfluidic Sensing Platform for the Detection of miR‐30b from Milk Samples. Electroanalysis.  https://doi.org/10.1002/elan.70066  

Fouéré C, Costes V, Hozé C, Raja Ravi Shankar A, Besnard F, Costa Monteiro Moreira G, Sorin V, Le Danvic C, Chaulot-Talmon A, Ali F, Deloche MC, Bonnet A, Sellem E, Jammes H, Fritz S, Boussaha M, Boichard D, Kiefer H, Sanchez MP. Genetic regulation of sperm DNA methylation in cattle through meQTL mapping. BMC Genomics. GBOS https://doi.org/10.1186/s12864-025-11934-1

Fresco S, Boichard D, Aguerre S, Fritz S, Martin P    Short communication: First insights into response to selection for reducing methane emissions in dairy cows. Animal  GBOS https://doi.org/10.1016/j.animal.2025.101700    

Fresco S, Sanchez M-P, Boichard D, Fritz S, Martin P. Sequence-based GWAS reveals genes and variants associated with predicted methane emissions in French dairy cows. Gen Sel Evol. https://doi.org/10.1186/s12711-025-00977-z 

Galambos N, Parisot N, Vallier A, Bevilacqua C, Balmand S, Vincent-Monegat C, Rebollo R, Gillet B, Hughes S, Heddi A, Zaidman-Remy A. Dual-transcriptomics on microdissected cells reveals functional specialisation of symbiont-bearing-cells and contrasted responses to nutritional stress in the cereal weevil. Microbiome https://doi.org/10.1186/s40168-025-02164-0  

Grohs G, Capitan A. NOA1 deficiency observed in a subset of Montbéliarde calves with bilateral anophthalmia. Animal genetics GBOS  https://doi.org/10.1111/age.70058

Grohs G, Minéry S, Fritz S, Boussaha M, Capitan A. A recessive deleterious missense variant in PEX7 causes a lethal form of chondrodysplasia in Bazadaise cattle. Animal genetics https://doi.org/10.1016/10.1111/age.70035

Haffray P, Enez F, Mahunon H, Lorgeoux B, Blanc PP, Genestout L, Rivaton A, Bugeon J, Liautard-Haag C, Gagnaire PA, Vandeputte M. High residual additive genetic variability in a Pacific blue shrimp Litopenaeus stylirostris population after 36 generations of domestication from only 4 estimated founders. Aquaculture https://doi.org/10.1016/j.aquaculture.2025.742835 

Herzog L, Reine F, Castille J, Passet B, Moudjou M, Bonnet R, Torres JM, Rezaei H, Vilotte JL, Béringue V, Igel A. Optimization and evaluation of new decontamination procedures inactivating human prions. J Hosp Inf https://doi.org/10.1016/j.jhin.2024.12.013  

Hurtaud C, Bernard L, Rau A, Cebo C. Milking frequency and dairy cow susceptibility to lipolysis interact to alter milk lipolysis and composition. J Dairy Science https://doi.org/10.3168/jds.2025-26537  

Jacques A, Tixier-Boichard M, Restoux G. Optimising the Use of Cryopreserved Genetic Resources for the Selection and Conservation of Animal Populations. Journal of Animal Breeding and Genetics. https://doi.org/10.1111/jbg.70000 

Jansseune, S.C.G., Hendriks, W.H., Blanc, F., Estellé, J., Bruneau, N., Coville, J.-L., Pinard-van der Laan, M.-H. A lactobacilli-based probiotic but not its postbiotic reduces intestinal inflammatory pathways e1pression in broilers fed a non-starch polysaccharide rich challenge diet. Poultry Science. Gems https://doi.org/10.1016/j.psj.2025.106159

Jansseune S,  Hendriks WH, Pinard van der Laan MH, Blanc F. Feed additive carriers affected the physiological effects of a lactobacilli-based pro- and postbiotic in broilers. Animal Feed Science and Technology. https://doi.org/10.1016/10.1016/j.anifeedsci.2025.116485  

Jansseune, S.C.G., van Baal, J., Blanc, F., Lammers, A. Impact of low and high lipopolysaccharide doses on the early e1pression of immune related genes and transcription factors in chicken macrophage-like HD11 cells. Poultry Science Gems https://doi.org/10.1016/j.psj.2025.106229  

Jansseune S, Lammers A, Hendriks WH, van Baal J, Wierenga PA. The Heat Treatment of a Lactobacilli Probiotic to Derive a Postbiotic Has Minor Effects on the Metabolomic Profile. Fermentation https://doi.org/10.3390/fermentation11020087  

Jansseune S, van Baal J, Blanc F, Lammers A. Lactobacilli-based postbiotic differentially affects chicken macrophage-like HD11 cells depending on stimulatory lipopolysaccharide dosage. BMC Veterinary Research. https://doi.org/10.1186/s12917-025-04902-w      

Kallianioti A, Bourdon G, Chevaleyre C, Péchou1 C, Ramé C, Bourgeais J, Hérault O, Geoffre N, Darde T, Plotton I, Douard V, Dupont J, Froment P. Inhibiting the fructose transporter GLUT5 boosts testosterone production in a murine mLTC-1 leydig cell line. Mol Cell Endocrinol    Plf  https://doi.org/10.1016/j.mce.2025.112658         

Kallianioti A, Bourdon G, Grandhaye J, Chevaleyre C, Aboulouard S, Pechoux C, Ribes S, Sellem E, Rame C, Plotton I, Fournier I, Salzet M, Dupont J, Douard V, Froment P    Mice. Lacking the Fructose Transporter Glut5 Exhibit Excessive Androgens and Reduced Sperm Motility. Endocrinology https://doi.org/10.1210/endocr/bqaf005 

Karami K, Sabban J, Cerutti C, Devailly G, Foissac S, Gourichon D, Hubert A, Hubert J-N, Leroux S, Zerjal T, Lagarrigue S, Pitel F. Molecular responses of chicken embryos to maternal heat stress through DNA methylation and gene expression: a pilot study. Environmental epigenetics. https://doi.org/10.1093/eep/dvaf009 

Kouadio AK, Boussou CK, Canonne M, Gaillard J, Pouil S, Pepey E. Genotoxicity Risk Assessment in Nile tilapia (Oreochromis niloticus) from a Hatchery Exposed to Pesticides in the Haut-Sassandra Region, Côte d’Ivoire    Bull Environ Contam Toxicol.  https://doi.org/10.1007/s00128-025-04120-y  

Kouadio AK, Pepey E, Fertin L, Niamien H-J K, Brou S, Boussou CK, Pouil S. Fish farming for diversifying cocoa production in Côte d’Ivoire: Typology of practices. Aquaculture report https://doi.org/10.1016/j.aqrep.2025.102866  

Laloë D, Gatien J, Dupuy C, Archilla C, Laffont L, Ruffini S, Canon E, Le Bourhis D, Deloche MC, Dubois O, Leguienne B, Nadal-Desbarats L, Calderari S, Escouflaire C, Desnoes O, Schibler L, Salvetti P, Duranthon V. In vitro production significantly reduces metabolic differences among bovine embryos. Metabolomics. GiBBS https://doi.org/10.1007/s11306-025-02352-1

Naji MM, Klopp C, Eché C, Di Franco A, Birbes C, Marcuzzo C, Suin A, Iampietro C, Kuchly C, Vernette C, Fritz S, Grohs C, Faraut T, Gaspin C, Milan D, Donnadieu C, Boichard D, Sanchez MP, Boussaha M. Comprehensive detection of structural variations in long and short reads dataset of French cattle    Sci. Rep. GBoS https://doi.org/10.1038/s41598-025-24477-8

Langer BE, Amaral A, … Charles M, …, Lallais D, …Rocha D, …, the nf-core Community. Empowering bioinformatics communities with Nextflow and nf-core. Genome Biology https://doi.org/10.1186/s13059-025-03673-9 

Leduc A, Rau A, Laloë D, Le Guillou S, Martin P, Gelé M, Pires J, Faulconnier Y, Leroux C, Boutinaud M, Le Provost F. Integrated multi-omic analyses of bovine milk identify biomarkers of negative energy balance. Molecular Omics https://doi.org/10.1039/d4mo00190g  

Madrid A, De Crémoux R, Delaby L, Larroque H, Novak S, Vinet A    Will ruminant farming adapt to climate change? Impacts and levers for adaptation. INRAE Prod. https://doi.org/10.20870/productions-animales.2025.38.2.9200  

Marín-Moreno, A., Reine, F., Herzog, L., Aron, N., Jaffrézic, F., Vilotte, J. L., Rezaei, H., Andréoletti, O., Martin, D, Béringue V. Assessment of the Zoonotic Potential of Atypical Scrapie Prions in Humanized Mice Reveals Rare Phenotypic Convergence but Not Identity With Sporadic Creutzfeldt-Jakob Disease Prions. The Journal of infectious diseases. https://doi.org/10.1093/infdis/jiae093  

Marin-Moreni A,Reine F, Jaffrézic F, Herzog L, Rezaei H, Quadrio I, Haik S, Béringue V, Martin D. Human PrP E219K: a new and promising substrate for robust RT-QuIC amplification of human prions with potential for strain discrimination. Microbiology Spectrum. https://doi.org/10.1128/spectrum.00292-25  

Pepey E, Pulliat G, Hoai TD, Bruckert M, Conéjéro G, Boggio D, Perrin C, Valette M, Pouil S. Genotoxic Potential of Anthropized Water Bodies in the Hanoi Region of Vietnam Assessed with the Comet Assay on Erythrocytes of Nile Tilapia (Oreochromis niloticus). Bull Environ Contam Toxicol. https://doi.org/10.1007/s00128-025-04023-y 

Poncet M, Féménia M, Ben-Braiek M, Charles M, Duprat N, Chałaśkiewicz K, Boulling A, Taniguchi H, Blanquet V, Rocha D. Discovery of a regulatory polymorphism in the bovine PICALM gene associated with milk αS1-casein concentration. Animal genetics. https://doi.org/10.1016/10.1111/age.70036 

Pouil S, Aubin J, Phocas F. Deriving breeding goals and e1pected selection responses to reduce environmental impacts in rainbow trout farming. Genet Sel Evol. Guppie https://doi.org/10.1186/s12711-025-01018-5

Sebastià C, Folch JM, Ballester M, Estellé J, Passols M, Muñoz M, García-Casco JM, Fernández AI, Castelló A, Sánchez A, Crespo-Piazuelo D. Interrelation between gut microbiota, SCFA, and fatty acid composition in pigs. mSystems. https://doi.org/10.1128/msystems.01049-23  

Racanati A, Tribout T, Sabuj A, Blanc F, Cuyabano B , Lecoeur A, Brard-Fudulea S, Bruneau N, Gourichon D, Becot L, Burlot T, Calenge F, Pinard-Van Der Laan M-H. Genetic influence underlying individual variation in vaccine responses in a White Leghorn laying hen line. Animal. https://doi.org/10.1016/j.animal.2025.101686  

Ricard A, Deretz S, Menard C, Priest BDS. Is There a Genetic Link Between Resting Infrared Thermography in Young Horses and Longevity in Jumping Competition? J Anim Breed Genet BIGE https://doi.org/10.1111/jbg.70038
                    
Rivard C, Djebrani-Oussedik N, Cloix R, Hue-Beauvais C, Kuszla N, Ivanova E, Simon M, Dufour A, Launay F, Gazeau F, Acloque H, Parat S, Poupon J, Burtey A. Detection of titanium dioxide particles in human, animal and infant formula milk. Science Total Environnement. https://doi.org/10.1016/j.scitotenv.2025.180040 

Rodrigues TV, Marthey S, Auger S, de Jesus LL, Henry C, Pechoux C, Arteni A, Martin V, Langella P, Soares SD, Andre G, Azevedo VAD, Chatel JM. The Microbial Anti-Inflammatory Molecule (MAM) is a key protein processed and exported to Faecalibacterium duncaniae envelope. Gut Microbes https://doi.org/10.1080/19490976.2025.2519695     

Schwartz-Cornil I, Pascale F, Jouneau L, Huriet M, Estephan J, Bourge M, Richard C, Gelin V, Bevilacqua C, Rivière J, Vu Manh T-P, Djebbour M, Premachandra A, Gouin C, De Wolf J, Mimbimi C, Magnan A, Roux A, Grassin-Delyle S, Devillier P, Descamps D, Bertho N, Jacqmin S, Le Guen M, Sage E, Glorion M. Preconditioning donors with corticosteroids improves early lung graft immunity. Frontiers in Immunology.  https://doi.org/10.3389/fimmu.2025.1668591 

Sinpru, P., Jantasaeng, O., Pasri, P., Kamkrathok, B., Kaewsatuan, P., Pengsanthia, S., Molee, W., Rau, A., Porter, T.E., Ti1ier-Boichard, M., Molee, A. Transcriptome profiling of the pituitary gland reveals candidate genes for divergent feed efficiency in slow-growing chickens. Italian Journal of Animal Science.  GiBBS https://doi.org/1080/18280511.2025.2596846  

Verrier E, Bouffartigue B, Lauvie A, Danvy S, Duclos D, Journaux L, Naves M, Charvolin-Lemaire E, Rouger R, Hazard D, Ducos A    Être ou ne pas être rustique ? Une réponse pragmatique à une question complexe dans le cas des races ovines françaises. Ethnozootechnie 

Verrier E. La sculpture animalière dans Paris. Ethnozootechnie 

Xiang R, Fang L, Liu S, Liu GE, Tenesa A, Gao Y, Mason BA, Chamberlain AJ, Goddard ME; CattleGTE1 Consortium. Genetic score omics regression and multitrait meta-analysis detect widespread cis-regulatory effects shaping bovine comple1 traits. PNAS Ne1us GBOS   https://doi.org/10.1093/pnasnexus/pgaf208

Yanez JM, Neira R, Hashimoto DT, Lallias D, Xu P, Jerry Dr. Recent advancements in aquaculture genetics. Aquaculture https://doi.org/10.1016/j.aquaculture.2025.742781  

Zhou HJ, Clark E, Guan DL, Lagarrigue s, Fang LZ, Cheng H, Tuggle CK, Kapoor M, Wang Y, Giuffra E, Egidy G. Epigenomics of Transcriptional. Annual review of animal biosciences https://doi.org/10.1146/annurev-animal-111523-102217