Recent publications
Andriuta D, Roussel M, Chene G, Fischer C, Mangin J-F, Dubois B, Vellas B, Pasquier F, Tison F, Blanc F, Hanon O , Paquet C, Gabelle A, Ceccaldi M, Annweiler C, Krolak-Salmon P, David R, Rouch-Leroyer I, Benetos A, Moreaud O, Sellal F, Jalenques I, Vandel P, Bouteloup V, Godefroy O. 2024. The pattern of cortical thickness associated with executive dysfunction in MCI and SCC: The MEMENTO cohort.Revue Neurologique https://doi.org/10.1016/j.neurol.2024.02.394
Brulin L, Ducrocq S, Even G, Sanchez M.-P, Martel S, Merlin S, Audebert C, Croiseau P, Estelle J. 2024. Bifidobacterium abundance in the faecal microbiota is strongly associated with milk traits in dairy cattle. Animal https://doi.org/10.1016/j.animal.2024.101243
Degalez F, Charles M, Foissac S, Zhou H, Guan D , Fang L, Klopp C, Allain C, Lagoutte L, Lecerf F, Acloque H, Giuffra E, Pitel F, Lagarrigue S. 2024. Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues. Scientif Rep https://doi.org/10.1038/s41598-024-56705-y
Gindri M, Ithurbide M, Pires J, Rupp R, Puillet L, Friggens NC. 2024. Responses of selected plasma metabolites to a two-day nutritional challenge of goats divergently selected for functional longevity. J Dairy Sci https://doi.org/10.3168/jds.2023-23908
Lecoeur A, Blanc F, Gourichon D, Bruneau N, Burlot T, Pinard-van der Laan M-H, Calenge F. 2024. Host genetics drives differences in cecal microbiota composition and immune traits of laying hens raised in the same environment. Poultry Science https://doi.org/10.1016/j.psj.2024.103609
Métayer Coustard S, Rossignol C, Collin A, Blanc F, Lallier N, Schouler C, Le Bihan-Duval E, Travel A, Lalmanach A-C. 2024. Intestinal avian defensin 2 and robustness of chicks. Poultry Science https://doi.org/10.1016/j.psj.2023.103175
2024
Bernard M, Lecoeur A, Coville J-L, Bruneau N, Jardet D, Lagarrigue S, Meynadier A, Calenge F, Pascal G, Zerjal T. 2024. Relationship between feed efficiency and gut microbiota in laying chickens under contrasting feeding conditions. Scientif Rep
Bessa Ducrot C, Barrio MB, Boissy A, Charrier F, Even S, Mormède P, Petit S, Pinard-van der laan M-H, Schelcher F, Casabianca F, Ducos A, Foucras G, Guatteo R, Peyraud J-L, Vayssier-Taussat M, Veysset P,Friggens NC,Fernandez X. 2024. Animal Board Invited Review: Improving animal health and welfare in the transition of livestock farming systems: towards social acceptability and sustainability. Animal. https://doi.org/10.1016/j.animal.2024.101100
Bessa Ferraira VH, Seressia J, Lansade L, Même N, Bernard J, Pinard-van der Laan M-H, Calenge F, Lecoeur A, Calandreau L, Dutour M. 2023. Discrimination of familiar and unfamiliar human voices is independent of prolonged human-animal interaction in domestic chicks. Applied Animal Behaviour Science https://doi.org/10.1016/j.applanim.2023.106138
BRULIN L., DUCROCQ S., ESTELLE J., EVEN G., MARTEL S., MERLIN S., AUDEBERT C., CROISEAU P., SANCHEZ M.P. 2024. The fecal microbiota of Holstein cows is heritable and genetically correlated to dairy performances. JDS https://doi.org/10.3168/jds.2024-25003
Brulin L, Ducrocq S, Even G, Sanchez M.-P, Martel S, Merlin S, Audebert C, Croiseau P, Estelle J. 2024. Characterization of bovine vaginal microbiota and its relationship with host fertility, health and production. Scientif Rep. https://doi.org/10.1038/s41598-024-69715-7
Débare H, Blanc F, Piton G, Leplat JJ, Vincent‑Naulleau S, Rivière J, Vilotte M, Marthey S, Lecardonnel J, Coville JL, Estellé J, Rau A, Bourneuf E, Egidy G. Malignant features of minipig melanomas prior to spontaneous regression. Scientif Rep. https://doi.org/10.1038/s41598-024-59741-w
De Wolf J, Gouin C, Jouneau L, Glorion M, Premachandra A, Pascale F, Huriet M, Estephan J, Leplat JJ, Egidy G, Richard C, Gelin V, Urien C, Roux A, Le Guen M, Schwartz-Cornil I, Sage E. 2024. Prolonged dialysis during ex vivo lung perfusion promotes inflammatory responses. Front Immunol https://doi.org/10.3389/fimmu.2024.1365964
Jansseune S, Blanc F, Lammers A, van Baal J, Bruneau N, Pinard van der Laan MH, Hendriks WH, Calenge F. 2024. Microbiota but not immune modulation by a pro- and postbiotic was associated with the diet-additive interaction in broilers. Poultry Science. https://doi.org/10.1016/j.psj.2024.104184
Jansseune S, Lammers A, van Baal J, Blanc F, Pinard van der Laan MH, Calenge F, Hendriks WH. Diet composition influences probiotic and postbiotic effects on broiler growth and physiology. Poultry Science. https://doi.org/10.1016/j.psj.2024.103650
Larzul C, Estelle J, Borey M, Blanc F, Lemonnier G, Billon Y, Thiam MG, Quinquis B, Galleron N, Jardet D, Lecardonnel J, Plaza Onate F, Rogel-Gaillard C. 2024. Driving gut microbiota enterotypes through host genetics. Microbiome. https://doi.org/10.1186/s40168-024-01827-8
The FarmGTEx PigGTEx Consortium,... Giuffra E... Rocha D, Charles M,... Fang L. 2024. A compendium of genetic regulatory effects across pig tissues. Nature comm. https://doi.org/10.1038/s41588-023-01585-7
2023
Barone M, Ramayo-Caldas Y, Estelle J, Tambosco K, Chadi S, Maillard F, Gallopin M, Planchais J, Chain F, Kropp C, Rios-Covian D, Sokol H, Brigidi P, Langella P, Martin R. 2023. C-section delivery induces gut barrier-microbiota imbalances in early life and leads to higher sensitivity to inflammation. BMC microbiome.
Bhatia V, Bai X, Fortin F, Harding J, Dyck M, Field C, Rogel-Gaillard C, Blanc F, Plastow G, Dekkers JCM Disease Resilience Indicators Based on Phagocytosis Assays on Blood from Young Healthy Pigs. 2023. JOURNAL OF ANIMAL SCIENCE https://doi.org/10.1093/jas/skad281.031
Blanc F, Bertho N, Piton G, Leplat J-J, Egidy G, Bourneuf E, Vincent-Naulleau S, Prevost-Blondel A. 2023. Deciphering the immune reaction leading to spontaneous melanoma regression: initial role of MHCII+ CD163- macrophages. Cancer immunology, immunotherapy.
Coustard Metayer S, Rossignol C, Collin A, Blanc F, Lallier N, Schouler C, Duval Le Bihan E, Travel A, Lalmanach A-C. 2023.Intestinal avian defensin 2 and robustness of chick. SCIENCE https://doi.org/10.1016/j.psj.2023.103175
Crespo-Piazuelo D, Acloque H, González-Rodríguez O, Mongellaz M, Mercat M-J, Bink MCAM, Huisman AE, Ramayo-Caldas Y, Sánchez JP, Ballester M. 2023. Identification of transcriptional regulatory variants in pig duodenum, liver, and muscle tissues. Gigasciences.
Glorion M, Pascale F, Estephan J, Huriet M, Gouin C, Urien C, Blanc F, Riviere J, Richard C, Gelin V, De Wolf J, Le Guen M, Magnan A, Roux A, Schwartz-Cornil I, Sage E . 2023. A cross-circulatory platform for monitoring innate allo-responses in lung grafts. PloS one.
Glorion M, Pascale F, Huriet M, Estephan J, Gouin C, Urien C, Bourge M, Egidy G, Richard C, Gelin V, De Wolf J, Le Guen M, Magnan A, Roux A, Devillier P, Schwartz-Cornil I, Sage E. 2023. Differential early response of monocyte/macrophage subsets to intra-operative corticosteroid administration in lung transplantation. Frontiers in immunology https://doi.org/10.3389/fimmu.2023.1281546
Michaels V, Chalabi S, Legrand A, Renard J, Tejerina E, Daouya M, Fabrega S, Megret J, Olaso R, Boland A, Deleuze JF, Battail C, Tronik-Le Roux D, Ezine S. 2023. Co-Transplantation of Barcoded Lymphoid-Primed Multipotent (LMPP) and Common Lymphocyte (CLP) Progenitors Reveals a Major Contribution of LMPP to the Lymphoid Lineage. IntJMolSci.
Sebastia C, Folch JM, Ballester M, Estelle J, Passols M, Munoz M, Garcia-Casco JM, Fernandez AI, Castello A, Sanchez A, Crespo-Piazuelo D Interrelation between gut microbiota, SCFA, and fatty acid composition in pigs.mSystems https://doi.org/10.1128/msystems.01049-23
Rani S, Sorensen MT, Estelle J, Noel SJ, Norskov N, Krogh U, Foldager L, Hojberg. 2023. Gastrointestinal Microbial Ecology of Weaned Piglets Fed Diets with Different Levels of Glyphosate. MICROBIOLOGY SPECTRUM.
2022
Bedere N, Berghof TVL, Peeters K, Pinard-Van der Laan MH, Visscher J, David I, Mulder HA. 2022. Using egg production longitudinal recording to study the genetic background of resilience in purebred and crossbred laying hens. Gen Sel Evol.
Borey M, Bed’Hom B, Bruneau N, Estellé J, Larsen F, Blanc F, Pinard-van der Laan M-H, Dalgaard T, Calenge F. 2022. Caecal microbiota composition of experimental inbred MHC-B lines infected with IBV differs according to genetics and vaccination. Scientific report
Cazals A, Estelle J, Bruneau N, Coville JL, Menanteau P, Rossignol MN, Jardet D, Bevilacqua C, Rau A, Bed'Hom B, Velge P, Calenge F. 2022. Differences in caecal microbiota composition and Salmonella carriage between experimentally infected inbred lines of chickens. Gen Sel Evol.
De Wolf J, Glorion M, Jouneau L, Estephan J, Leplat JJ, Blanc F, Richard C, Urien C, Roux A, Le Guen M, Journois D, Schwartz-Cornil I, Sage E. 2022. Challenging the Ex Vivo Lung Perfusion Procedure With Continuous Dialysis in a Pig Model. TRANSPLANTATION
Duclos R, Delanoue E, Dockes AC, Journaux L, Sourdioux M, Bidanel JP. 2022. Targeted genome modification applied to animals: in between controversies. INRA PROD ANIM.
Mage RJ, Rogel-Gaillard C. 2022. Immunogenetics in the rabbit. The genetics and genomics of the rabbit. Book, Chap. 5
Wragg D, Eynard SE, Basso B, Canale-Tabet K, Labarthe E, Bouchez O, Bienefeld K, Bienkowska M, Costa C, Gregorc A, Kryger P, Parejo M, Pinto MA, Bidanel JP, Servin B, Le Conte Y, Vignal A. 2022. Complex population structure and haplotype patterns in the Western European honey bee from sequencing a large panel of haploid drones. Mol Eco Res
2021
Beaumont M, Blanc F, Cherbuy C, Egidy G, Giufra E, Lacroix‑Lamandé S, Wiedemann A. 2021. Intestinal organoids in farm animals. Vet Res. 52, 33
Blanc F, Maroilley T, Revilla M, Lemonnier G, Leplat JJ, Billon Y, Ravon L, Bouchez O, Bidanel JP, Bed’Hom B, Pinard‑van der Laan MH, Estellé J, Rogel‑Gaillard C. 2021. Influence of genetics and the pre-vaccination blood transcriptome on the variability of antibody levels after vaccination against Mycoplasma hyopneumoniae in pigs. Genet Sel Evol. 53, 24
Borey M, Blanc F, Lemonnier G, Leplat JJ, Jardet D, Rossignol MN, Ravon L, Billon Y, Bernard M, Estelle J, Rogel-Gaillard C. 2021. Links between fecal microbiota and the response to vaccination against influenza A virus in pigs. NPJ Vaccines, 6
Chamberlain AJ, Cheng HH, Giuffra E, Kuehn C, Tuggle CK, Zhou HJ. 2021. Editorial: Functional Annotation of Animal Genomes. Front Genet. 12
Crisci E, Moroldo M, Manh TPV, Mohammad A, Jourdren L, Urien C, Bouguyon E, Bordet E, Bevilacqua C, Bourge M, Pezant J, Pleau A, Boulesteix O, SchwartzI I, Bertho N, Giuffra E. 2020. Distinctive cellular and metabolic reprogramming in porcine lung mononuclear phagocytes infected with type 1 PRRSV strains. Front Immunol. 11, 588411
Davaine C, Hadadi E, Taylor W, Bennaceur-Griscelli A, Acloque H. 2021. Inducing Sequential Cycles of Epithelial-Mesenchymal and Mesenchymal-Epithelial Transitions in Mammary Epithelial Cells. Methods Mol Biol. 2179, 341-351
Ducrot C, Barrio MB, Boissy A, Casabianca F, Pinard-van der Laan MH, Maillet I. 2021. Comment faciliter la construction et la conduite des projets interdisciplinaires : retour d’expérience d’un programme de recherche sur la gestion intégrée de la santé des animaux en élevage. Nat Sci Soc 29 (2) 213-222 (2021). 29, 213-222
Hadadi E, Acloque H. 2021. Role of circadian rhythm disorders on EMT and tumour-immune interactions in endocrine-related cancers. Endocr Relat Cancer. 28, R67-R80
Hadadi E, Acloque H. 2021. Effets des altérations du rythme circadien sur l’évolution du cancer du sein. Med Science. 37, 538-541
Jehl F, Degalez F, Bernard M, Lecerf F, Lagoutte L, Désert C, Coulée M, Bouchez O, Leroux S, Abasht B, Tixier-Boichard M, Bed’hom B, Burlot T, Gourichon D, Bardou P, Acloque H, Foissac S, Djebali S, Giuffra E, Zerjal T, Pitel F, Klopp C, Lagarrigue S. 2021. RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species. Front Genet.
Jehl F, Muret K, Bernard M, Boutin M, Lagoutte L, Désert C, Dehais P, Esquerré D, Acloque H, Giuffra E, Djebali S, Foissac S, Derrien T, Pitel F, ZerjalT, Klopp C, Lagarrigue S. 2020. An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues. Sci Rep. 10, 20457
López-García A, Benítez R, Núñez Y, Gómez-Izquierdo E, de Mercado E, García-Casco JM, González-Recio O, López-Bote C, Estellé J, Óvilo C. 2021. Influence of genetic background and dietary oleic acid on gut microbiota composition in Duroc and Iberian pigs. PlosOne
Martin P, Vinet A, Denis C, Grohs C, Chanteloup L, Dozias D, Maupetit D, Sapa J, Renand G, Blanc F. 2021. Determination of immunoglobulin concentrations and genetic parameters for colostrum and calf serum in Charolais animals. J Dairy Sci. 104, in press
Minnoye L, Taskiran II, Mauduit D, Fazio M, Van Aerschot L, Hulselmans G, Christiaens V, Makhzami S, Seltenhammer M, Karras P, Primot A, Cadieu E, van Rooijen E, Marine JC, Egidy G, Ghanem GE, Zon L, Wouters J, Aerts S. 2020. Cross-species analysis of enhancer logic using deep learning. Genome Res. 30, 1815-1834
Mompart F, Kamgoue A, Lahbib-Mansais Y, Robelin D, Bonnet A, Rogel-Gaillard C, Kocanova S, Yerle-Bouissou M. 2021. The 3D nuclear conformation of the major histocompatibility complex changes upon cell activation both in porcine and human macrophages. BMC Mol Cell Biol. 22
Rogel-Gaillard C. 2021. Evolutions de la recherche en génétique animale et anticipation des besoins de formation. Ethnozootechnie. 109, 29-40
Schwochow D, Bornelöv S, Jiang T, Li J, Gourichon D, Bed’Hom B, DorshorstBJ, Chuong, C-M, Tixier-Boichard M, Andersson L. 2021. The feather pattern autosomal barring in chicken is strongly associated with segregation at the MC1R locus. Pigm cell Melanoma
Tixier-Boichard M, Fabre S, Dhorne-Pollet S, Goubil A, Acloque H, Vincent-Naulleau S, Ross P, Wang Y, Chanthavixay G, Cheng H, Ernst C, Leesburg V, Giuffra E, Zhou H, the Collaborative Working Group. 2021. Tissue Resources for the Functional Annotation of Animal Genomes. Front Genet. 12
Zerjal T, Härtle S, Gourichon D, Guillory V, Bruneau N, Laloë D, Pinard‑van der Laan M-H, Trapp S, Bed’hom B, Quéré P. 2021. Assessment of trade-ofs between feed efciency, growth-related traits, and immune activity in experimental lines of layer chickens. Genet Sel Evol. 53, 44
2020
Artus J, Hue I, Acloque H. 2020. Preimplantation development in ungulates: a 'ménage à quatre' scenario. Reproduction. 159, R151-R171 GeMS
López-Colom P, Estellé J, Bonet J, Coma J, Martín-Orúe SM. 2020. Applicability of an unmedicated feeding program aimed to reduce the use of antimicrobials in nursery piglets: impact on performance and fecal microbiota. Animals (Basel). 10, pii: E242
Ballester M, Ramayo-Caldas Y, Gonzalez-Rodriguez O, Pascual M, Reixach J, Diaz M, Blanc F, Lopez-Serrano S, Tibau J, Quintanilla R. 2020. Genetic parameters and associated genomic regions for global immunocompetence and other health-related traits in pigs. Sci Rep. 10, 18462
Bidanel JP, Silalahi P, Tribout T, Canario L, Ducos A, Garreau H, Gilbert H, Larzul C, Milan D, Riquet J, Schwob S, Mercat MJ, Hassenfratz C, Bouquet A, Bazin C, Bidanel J. 2020. Cinquante années d’amélioration génétique du porc en France : bilan et perspectives. INRAE Prod Anim. 33, 1-16
Blanc F, Prévost-Blondel A, Piton G, Bouguyon E, Leplat JJ, Andréoletti F, Egidy G, Bourneuf E, Bertho N, Vincent-Naulleau S. 2020. The composition of circulating leukocytes varies with age and melanoma onset in the MeLiM pig biomedical model. Front Immunol. 11, 291
Borey M, Estellé J, Caidi A, Bruneau N, Coville JL, Hennequet-Antier C, Mignon-Grasteau S, Calenge F. 2020. Broilers divergently selected for digestibility differ for their digestive microbial ecosystems. PLoS One. 15, e0232418.
Carvalho AV, Hennequet-Antier C, Crochet S, Bordeau T, Courousse N, Cailleau-Audouin E, Chartrin P, Darras VM, Zerjal T, Collin A, Coustham V. 2020. Embryonic thermal manipulation has short and long-term effects on the development and the physiology of the Japanese quail. PLoS One. 15, e0227700
Feron R, Zahm M, Cabau C, Klopp C, Roques C, Bouchez O, Eché C, Valiere S, Donnadieu C, Haffray P, Bestin A, Morvezen R, Acloque H, Euclide PT, Wen M, Jouanno E, Schartl M, Postlethwait JH, Schraidt C, Christie MR, Larson WA, Herpin A, Guiguen Y. 2020. Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens. Mol Ecol Resour. 20, 531-543
Hammer SE, Ho CH, Ando A, Rogel-Gaillard C, Charles M, Tector M, TectorAJ, Lunney JK. 2020. Importance of the major histocompatibility complex (Swine Leukocyte Antigen) in swine health and biomedical research. Annu Rev Anim Biosci. 8, 171-198
Hadadi E,Taylor W, Li X, Aslan Y, Villote M, Rivière J, Duvallet G, Auriau C, Dulong S, Raymond Letron I, Provot S, Bennaceur-Griscelliand AL, Acloque H. 2020. Chronic circadian disruption modulates breast cancer stemness and immune microenvironment to drive metastasis in mice. Nat Commun. 11, 3193
Li JH, Zhong HZ, Ramayo-Caldas Y, Terrapon N, Lombard V, Potocki-Veronese G, Estelle-Fabrellas J, Popova M, Yang ZY, Zhang H, Li F, Tang SM, Yang FM, Chen W, Chen B, Li JY,Guo J, Martin C,Maguin E, Xu X. 2020. A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment. GigaScience. 9, 1-15
Manjula P, Bed’Hom B,Hoque Md R, Cho S, Seo D, Chazara O, Lee SH, Lee JH. 2020. Genetic diversity of MHC-B in 12 chicken populations in Korea revealed by single-nucleotide polymorphisms. Immunogenetics. 72, 367-379.
Marthey S, Estellé J, Blin A, Wahlberg P, Créchet1 F, Lecardonnel J, Tessiot F, Rogel‑Gaillard C, Bourneuf E. 2020. Transcription from a gene desert in a melanoma porcine model. Mol Genet Genomics, 295. 1239-1252
Massacci FR, Berri EM, Lemonnier G, Guettier E, Blanc F, Jardet D, Rossignol MN, Mercat MJ, Dore J, Lepage P, Rogel Gaillard C, Estelle J. 2020. Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets. Animal Microbiome. 2, 2
Massacci FR, Morelli A, Cucco L, Castinel A, Ortenzi R, Tofani S, Pezzotti G, Estelle J, Paniccia M, Magistrali CF. 2020. Transport to the slaughterhouse affects the Salmonella shedding and modifies the fecal microbiota of finishing pigs. Animals (Basel). 10, 676
Massacci FR, Tofani S, Forte C, Bertocchi M, Lovito C, Orsini S, Tentellini M, Marchi L, Lemonnier G, Luise D, Blanc F, Castinel A Bevilacqua C, Rogel-Gaillard C, Pezzotti G, Estellé J, Trevisi P2, Magistrali CF. 2020. Host genotype and amoxicillin administration affect the incidence of diarrhoea and faecal microbiota of weaned piglets during a natural multiresistant ETEC infection. J Anim Breed Genet. 137, 60-72
Moroldo M, Munyaka PM, Lecardonnel J, Lemonnier G, Venturi E, Chevaleyre C, Oswald IP, Estellé J, Rogel-Gaillard C. 2020. Integrative analysis of blood and gut microbiota data suggests a non-alcoholic fatty liver disease (NAFLD)-related disorder in French SLAdd minipigs. Sci Rep. 10, 234
Munyaka PM, Blanc F, Estellé-Fabrellas J, Lemonnier G, Leplat JJ, Rossignol MN, Jardet D, Plastow G, Billon Y, Willing BP, Rogel-Gaillard C. 2020. Discovery of predictors of Mycoplasma hyopneumoniae vaccine response efficiency in pigs: 16S rRNA gene fecal microbiota analysis. Microorganisms, 8- 1151
Perez-Pascual D, Estelle J, Dutto G, Rodde C, Bernardet JF, Marchand Y, Duchaud E, Przybyla C, Ghigo JM. 2020. Growth performance and adaptability of European sea bass (Dicentrarchus labrax) gut microbiota to alternative diets free of fish products. Microorganisms. 9, 1346
Shrestha M, Garreau H, Balmisse E , Bed'hom B, David I, Guitton E, Helloin E, Lenoir G, Maupin M, Robert R, Lantier F, Gunia M. 2020. Genetic parameters of resistance to pasteurellosis using novel response traits in rabbits. Genet sel Evol. 52, 34
Terry S, Engelsen AST, Buart S, Elsayed WS, Venkatesh GH, Chouaib S. 2020. Hypoxia-driven intratumor heterogeneity and immune evasion. Cancer Lett. 492, 1-10
2019
Arguello H, Estelle J, Leonard FC, Crispie F, Cotter PD, O'Sullivan O, Lynch H, Walia K, Duffy G, Lawlor PG, Gardiner GE. 2019. Influence of the intestinal microbiota on colonization resistance to Salmonella and the shedding pattern of naturally exposed pigs. mSystems. 4,e00021-19
Bernelin-Cottet C, Urien C, McCaffrey J, Collins D Donadei A, McDaid D, Jakob V, Barnier-Quer C, Collin N, Bouguyon E, Bordet E, Barc C, Boulesteix O, Leplat JJ, Blanc F, Contreras V, Bertho N, Moore AC, Schwartz-Cornil I. 2019. Electroporation of a nanoparticle-associated DNA vaccine induces higher inflammation and immunity compared to its delivery with microneedle patches in pigs. J Control Release. 308, 14-28
Bernelin-Cottet C, Urien C, Fretaud M, Langevin C, Trus I, Jouneau L, Blanc F, Leplat JJ, Barc C, Boulesteix O, Riou M, Dysart M, Mahé S, Studsrub E, Nauwynck H, Bertho N, Bourry O, Schwartz-Cornil I. 2019. A DNA prime immuno-potentiates a modified live vaccine against the porcine reproductive and respiratory syndrome virus but does not improve heterologous protection. Viruses. 11, pii: E576.
Bordet E, Fretaud M, Crisci E, Bouguyon E, Rault S, Pezant J, Pleau A, Renson P, Giuffra E, Larcher T, Bourge M, Bourry O, Boulesteix O, Langevin C, Schwartz-Cornil I, Bertho N. 2019. Macrophage-B cell interactions in the inverted porcine lymph node and their response to porcine reproductive and respiratory syndrome virus. Front Immunol. 10, 953
Cho IC, Park HB, Ahn JS, Han SH, Lee JB, Lim HT, Yoo CK, Jung EJ, Kim DH, Sun WS, Ramayo-Caldas Y, Kim SG, Kang YJ, Kim YK, Shin HS1, Seong PN, Hwang IS, Park BY, Hwang S, Lee SS, Ryu YC, Lee JH, Ko MS, Lee K, Andersson G, Pérez-Enciso M, Lee JW. 2019. A functional regulatory variant of MYH3 influences muscle fiber-type composition and intramuscular fat content in pigs. PLoS Genet. 15, e1008279
Crespo-Piazuelo D, Migura-Garcia L, Estelle J, Criado-Mesas L, Revilla M, Castello A, Munoz M, Garcia-Casco JM, Fernandez AI, Ballester M, Folch JM. 2019. Association between the pig genome and its gut microbiota composition. Sci Rep. 9, 8791
Dhorne-Pollet S, Crisci E, Mach N, Renson P, Jaffrézic F, Marot G, Maroilley T, Moroldo M, Lecardonnel J, Blanc F, Bertho N, Bourry O, Giuffra E. 2019. The miRNA-targeted transcriptome of porcine alveolar macrophages upon infection with Porcine Reproductive and Respiratory Syndrome. Virus. Sci Rep. 9-3160
Foissac S, Djebali S, Munyard K, Vialaneix N, Rau A, Muret K, Esquerré D, Zytnicki M, Derrien T, Bardou P, Blanc F, Cabau C, Crisci E, Dhorne-Pollet S, Drouet F, Faraut T, Gonzalez I, Goubil A, Lacroix-Lamandé S, Laurent F, Marthey S, Marti-Marimon M, Momal-Leisenring R, Mompart F, Quéré P, Robelin D, Cristobal MS, Tosser-Klopp G, Vincent-Naulleau S, Fabre S, Pinard-Van der Laan MH, Klopp C, Tixier-Boichard M, Acloque H, Lagarrigue S, Giuffra E. 2019. Multi-species annotation of transcriptome and chromatin structure in domesticated animals. BMC Biol. 17, 108.
Giuffra E, Tuggle CK, FAANG Consortium. 2019. Functional annotation of animal genomes (FAANG): Current achievements and roadmap. Annu Rev Anim Biosci. 7, 65-88
Guillocheau GM, El Hou A, Meersseman C, Esquerré D, Rebours E, Letaief R, Simao M, Hypolite N, Bourneuf E, Bruneau N, Vaiman A, Vander Jagt CJ, Chamberlain AJ, Rocha D. 2019. Survey of allele specific expression in bovine muscle. Sci Rep. 9, 4297
Massacci FR, Lovito C, Tofani S, Tentellini M, Genovese DA, De Leo AAP, Papa P, Magistrali CF, Manuali E, Trabalza-Marinucci M, Moscati L, Forte C. 2019. Dietary Saccharomyces cerevisiae boulardii CNCM I-1079 positively affects performance and intestinal ecosystem in broilers during a Campylobacter jejuni infection. Microorganisms. 7, pii: E596
Massacci FR, Clark A, Ruet A, Lansade L, Costa M, Mach N. 2019. Inter-breed diversity and temporal dynamics of the faecal microbiota in healthy horses. J Anim Breed Genet. in press
Muñoz M, Bozzi R, García-Casco J, Núñez Y, Ribani A, Franci O, García F, Škrlep M, Schiavo G, Bovo S, Utzeri VJ, Charneca R, Martins JM, Quintanilla R, Tibau J6, Margeta V, Djurkin-Kušec I, Mercat MJ, Riquet J, Estellé J, Zimmer C, Razmaite V, Araujo JP, Radović Č, Savić R, Karolyi D, Gallo M, Čandek-Potokar M, Fernández AI, Fontanesi L, Óvilo C. 2019. Genomic diversity, linkage disequilibrium and selection signatures in European local pig breeds assessed with a high density SNP chip. Sci Rep. 9, 13546
Munyaka PM, Kommadath A, Fouhse J, Wilkinson J, Diether N, Stothard P, Estellé J, Rogel-Gaillard C, Plastow G, Willing BP. 2019. Characterization of whole blood transcriptome and early-life fecal microbiota in high and low responder pigs before, and after vaccination for Mycoplasma hyopneumoniae. Vaccine. in press
Larsen FT, Bed’Hom B, Guldbrandtsen B, Dalgaard TS. 2019. Identification and tissue-expression profiling of novel chicken c-type lectin-like domain containing proteins as potential targets for carbohydrate-based vaccine strategies. Mol Immunol. 114, 216-225
Larsen FT, Bed'Hom B, Naghizadeh M, Kjaerup RB, Zohari S, Dalgaard TS. 2019. Immunoprofiling of peripheral blood from infectious bronchitis virus vaccinated MHC-B chicken lines - Monocyte MHC-II expression as a potential correlate of protection. Dev Comp Immunol. 96, 93- 102
Li JY, Bed'hom B, Marthey S, Valade M, Dureux A, Moroldo M, Pechoux C, Coville JL, Gourichon D, Vieaud A, Dorshorst B, Andersson L, Tixier-Boichard M. 2019. A missense mutation in TYRP1 causes the chocolate plumage color in chicken and alters melanosome structure. Pigment Cell Melanoma Res. 32, 381-39
Peyraud JL, Aubin J, Barbier M, Baumont R, Berri C, Bidanel J P, Citti C, Cotinot C, Ducrot C, Dupraz P, Faverdin P, Friggens N, Houot S, Nozières-Petit MO, Rogel-Gaillard C, Sante-Lhoutellier V. 2019. Science for tomorrow’s livestock farming: A forward thinking conducted at INRA. Inra Prod Anim. 32, 323-338
Pitel F, Calenge F, Aigueperse N, Estelle-Fabrellas J, Coustham V, Calandreau F, Morisson M, Pascale Chavatte-Palmer P, Ginane C. 2019. Role of the early environment in phenotypic variability and adaptation of animals to their environment. INRA Prod Anim. 32, 247-262
Revilla M, Friggens NC, Broudiscou LP, Lemonnier G, Blanc F, Ravon L, Mercat MJ, Billon Y, Rogel-Gaillard C, Le Floch N, Estellé J, Muñoz-Tamayo R. 2019. Towards the quantitative characterisation of piglets’ robustness to weaning: a modelling approach. Animal. in press.
Robic A, Morisson M, Leroux S, Gourichon D, Vignal A, Thebault N, Fillon V, Minvielle F, Bed'Hom B, Zerjal T, Pitel F. 2019. Two new structural mutations in the 5' region of the ASIP gene cause diluted feather color phenotypes in Japanese quail. Genet Sel Evol. 51, 12
2018
Argüello H, Estellé J, Zaldívar-López S, Jiménez-Marín Á, Carvajal A, López-Bascón MA, Crispie F, O'Sullivan O, Cotter PD, Priego-Capote F, Morera L, Garrido JJ. 2018. Early Salmonella Typhimurium infection in pigs disrupts Microbiome composition and functionality principally at the ileum mucosa. Sci Rep. 8, 7788.
Beauclercq S, Nadal-Desbarats L, Hennequet-Antier C, Gabriel I, Tesseraud S, Calenge F, Le Bihan-Duval E, Mignon-Grasteau S. 2018. Relationships between digestive efficiency and metabolomic profiles of serum and intestinal contents in chickens. Sci Rep. 8, 6678.
Blanc F, Créchet F, Bruneau N, Piton G, Leplat JJ, Andréoletti F, Egidy G, Vincent-Naulleau S, Bourneuf E. 2018. Impact of a CD4 gene haplotype on the immune response in minipigs. Immunogenetics. 70, 209-222.
Bordet E, Blanc F, Tiret M, Crisci E, Bouguyon E, Renson P, Maisonnasse P, Bourge M, Leplat JJ, Giuffra E, Jouneau L, Schwartz-Cornil I, Bourry O, Bertho N. 2018. Porcine reproductive and respiratory syndrome virus type 1.3 Lena triggers conventional dendritic cells 1 activation and T helper 1 immune response without infecting dendritic cells. Front Immunol. 9, 2299
Bordet E, Maisonnasse P, Renson P, Bouguyon E, Crisci E, Tiret M, Descamps D, Bernelin-Cottet C, Urien C, Lefèvre F, Jouneau L, Bourry O, Leplat JJ, Schwartz-Cornil I, Bertho N. 2018. Porcine alveolar macrophage-like cells are pro-inflammatory pulmonary intravascular macrophages that produce large titers of porcine reproductive and respiratory syndrome virus. Sci Rep. 8, 10172
Bourneuf E, Estellé J, Blin A, Créchet F, del Pilar Schneider M, Gilbert H, Brossard M, Vaysse A, Lathrop M, Vincent-Naulleau S, Demenais F. 2018. New susceptibility loci for cutaneous melanoma risk and progression revealed using a porcine model. Oncotarget. 9, 27682-27697
Crespo-Piazuelo D, Estelle J, Revilla M Criado-Mesas L Ramayo-Caldas Y, Ovilo C, Fernandez AI, Ballester M, Folch JM. 2018. Characterization of bacterial microbiota compositions along the intestinal tract in pigs and their interactions and functions. Sci Rep. 8, 12727
Lee C, Moroldo M, Perdomo-Sabogal A, Mach N, Marthey S, Lecardonnel J, Wahlberg P, Chong AY, Estellé J, Ho SYW, Rogel-Gaillard C, Gongora J. 2018. Inferring the evolution of the major histocompatibility complex of wild pigs and peccaries using hybridisation DNA capture-based sequencing. Immunogenetics. 70, 401-417.
Maroilley T, Berri M, Lemonnier G, Esquerré D, Chevaleyre C, Mélo S, Meurens F, Coville JL, Leplat JJ, Rau A, Bed’hom B, Vincent-Naulleau S, Mercat MJ, Billon Y, Lepage P, Rogel-Gaillard C, Estellé J. 2018. Immunome differences between porcine ileal and jejunal Peyer’s patches revealed by global transcriptome sequencing of gut-associated lymphoid tissues. Sci Rep, 8-9077
Muñoz M, Bozzi R, García F, Núñez Y, Geraci C, Crovetti A, García-Casco J, Alves E, Škrlep M, Charneca R, Martins JM, Quintanilla R, Tibau J, Kušec G, Djurkin-Kušec I, Mercat MJ, Riquet J, Estellé J, Zimmer C, Razmaite V, Araujo JP, Radović Č, Savić R, Karolyi D, Gallo M, Čandek-Potokar M, Fontanesi L, Fernández AI, Óvilo C. 2018. Diversity across major and candidate genes in European local pig breed. PLoS One. 13, e0207475
Wragg D, Técher MA, Canale-Tabet K, Basso, B, Bidanel JP, Labarthe E, Bouchez O, Le Conte Y, Clémencet J, Delatte H, Vignal A. 2018. Autosomal and mitochondrial adaptation following admixture: a case study on the honeybees of Reunion Island. Genome Biol Evol. 10, 220-238.
2017
Badaoui B, Fougeroux A, Petit F, Anselmo A, Gorni C, Cucurachi M, Cersini A, Granato A, Cardeti G, Formato G, Mutinelli F, Giuffra E, Williams JL, Botti S. 2017. RNA-sequence analysis of gene expression from honeybees (Apis mellifera) infected with Nosema ceranae. PLoS One, 12- e0173438.
Ballester M, Ramayo-Caldas Y, Revilla M, Corominas J, Castello A, Estelle J, Fernandez AI, Folch JM. 2017. Integration of liver gene coexpression networks and eGWAs analyses highlighted candidate regulators implicated in lipid metabolism in pigs. Sci Rep. 7, 46539.
Bourneuf E. 2017. The MeLiM minipig: An original spontaneous model to explore cutaneous melanoma genetic basis. Front Genet. 8, 148.
Bourneuf E, Otz P, Pausch H, Jagannathan V, Michot P, Grohs C, Piton G, Ammermüller S, Deloche MC, Fritz S, Leclerc H, Péchoux C, Boukadiri A, Hozé C, Saintilan R, Créchet F, Mosca M, Segelke D, Guillaume F, Bouet S, Baur A, Vasilescu A, Genestout L, Thomas A, Allais-Bonnet A, Rocha D, Colle MA, Klopp C, Esquerré D, Wurmser C, Flisikowski K, Schwarzenbacher H, Burgstaller J, Brügmann M, Dietschi E, Rudolph N, Fayolle G, Danchin-Burge C, Schibler L, Bed’Hom B, Hayes BJ, Daetwyler HD, Fries R, Boichard D, Pin D, Drögemüller C, Capitan A. 2017. Rapid discovery of de novo deleterious mutations in cattle enhances the value of livestock as model specie. Sci Rep. 7, 11466.
Campagne C, Reyes-Gomez E, Picco ME, Loiodice S, Salaun P, Ezagal J, Bernex F, Commère PH, Pons S, Esquerre D, Bourneuf E, Estellé J, Maskos U, Lopez-Bergami P, Aubin-Houzelstein G, Panthier JJ, Egidy G. 2017. RACK1 cooperates with NRASQ61K to promote melanoma in vivo. Cell Signal. pii: S0898-6568(17)30084-0.
Campagne C, Pons S, Esquerre D, Estellé J, Bourneuf E, Maskos U, Egidy G. 2017. Transcriptome of melanoma cells from two mouse models, Tyr:NRasQ61K and Tyr:Rack1-HA, Tyr:NRasQ61K. Data Brief. 14, 32-34.
Ducos A, Bed'Hom B, Acloque H, Pain B. 2017. Genome Editing: what impact for farm animal species ? INRA Prod Anim. 12, 3-18
Gilbert H, Billon Y, Brossard L, Faure J, Gatellier P, Gondret F, Labussière E, Lebret B, Lefaucheur L, Le Floch N, Louveau I, Merlot E, Meunier-Salaün MC, Montagne L, Mormede P, Renaudeau D, Riquet J, Rogel-Gaillard C, van Milgen J, Vincent A, Noblet J. 2017. Review: divergent selection for residual feed intake in the growing pig. Animal. ahead of print
Muret K, Klopp C, Wucher V, Esquerre D, Legeai F, Lecerf F, Désert C, Boutin M, Jehl F, Acloque H, Giuffra E, Djebali S, Foissac S, Derrien T, Lagarrigue S. 2017. Long noncoding RNA repertoire in chicken liver and adipose tissue. Genet Sel Evol. 49, 6
Roselli M, Pieper R, Rogel-Gaillard C, de Vries H, Bailey M, Smidt H, Lauridsen C. 2017. Immunomodulating effects of probiotics for microbiota modulation, gut health and disease resistance in pigs. Anim Food Sci Technol. in press.
Schwochow Thalmann D, Ring H, Sundström E, Cao X, Larsson M, Kerje S, Höglund A, Fogelholm J, Wright D, Jemth P, Hallböök F, Bed'Hom B, Dorshorst B, Tixier-Boichard M, Andersson L. 2017. The evolution of Sex-linked barring alleles in chickens involves both regulatory and coding changes in CDKN2A. PLoS Genet. 13, e1006665.
Silalahi P, Tribout T, Billon Y, Gogué J, Bidanel JP. 2017. Estimation of the effects of selection on French Large White sow and piglet performance during the suckling period. J Anim Sci. 95, 4333-4343
Wragg D, Techer MA, Canale-Tabet K, Basso B, Bidanel JP, Labarthe E, Bouchez O, Le Conte Y, Clémencet J, Delatte H, Vignal A. 2017. Autosomal and mitochondrial adaptation following admixture: a case study on the honeybees of Reunion Island. Genome Biol Evol, in press
2016
Campagne C, Reyes-Gomez E, Loiodice S, Gadin S, Ezagal J, Bernex F, Abitbol M, Louise A, Beermann F, Panthier JJ, Aubin-Houzelstein G, Egidy G. 2016. Haplosufficiency of PAX3 for melanoma development in Tyr::NRAS(Q61K); Cdkn2a(-/-) mice allows identification and sorting of melanoma cells using a Pax3(GFP) reporter allele. Melanoma Res. 26, 12-20
Désert C, Merlot E, Zerjal T, Bed'Hom B, Härtle S, Le Cam A, Roux,PF, Baeza E, Gondret F, Duclos M, Lagarrigue S. 2016. Transcriptomes of whole blood and PBMC in chickens. Comp Biochem Physiol. in press
Fulton JE, McCarron AM, Lund AR, Pinegar KN, Wolc A, Chazara O, Bed'Hom B, Berres M, Miller MM. 2016. A high-density SNP panel reveals extensive diversity, frequent recombination and multiple recombination hotspots within the chicken major histocompatibility complex B region between BG2 and CD1A1. Genet Sel Evol. 48, 1
Jousselin E, Clamens AL, Galan M, Bernard M, Maman S, Gschloessl B, Duport MG, Meseguer A, Calevro F, Coeur D'Acier A. 2016. Assessment of a 16S rRNA amplicon Illumina sequencing procedure for studying the microbiome of a symbiont-rich aphid genus. Molec Ecol Res. 16, 628-640
Maisonnasse P, Bouguyon E, Piton G, Ezquerra A, Urien C, Deloizy C, Bourge M, Leplat J-J , Simon G, Chevalier C, Vincent-Naulleau S, Crisci E, Montoya M, Schwartz-Cornil I, Bertho N. 2016. The respiratory DC/macrophage network at steady-state and upon influenza infection in the swine biomedical model. Mucosal Immunol. 9, 835-849
Ramayo-Caldas Y, Mach N, Lepage P, Levenez F, Denis C, Lemonnier G, Leplat JJ, Billon Y, Berri M, Dore J, Rogel-Gaillard C, Estelllé J. 2016. Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits. ISME Journal
Silalahi P, Tribout T, Prunier A, Billon Y, Gogue J, Bidanel JP. 2016. Estimation of the effects of selection on French Large White reproductive performance using frozen semen. J Anim Sci. 94, 3655-3662
Tuggle CK, Giuffra E, White SN, Clarke L, Zhou H, Ross PJ, Acloque H, Reecy JM, Archibald A, Bellone RR, Boichard M, et al. 2016. GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes. Anim Genet. 47, 528-533
Wragg D, Marti-Marimon M, Basso B, Bidanel JP, Labarthe E, Bouchez O, Le Conte Y, Vignal A. 2016. Whole-genome resequencing of honeybee drones to detect genomic selection in a population managed for royal jelly. Sci Rep. 6, 27168
Xiao L, Estellé J, Kiilerich P, Ramayo-Caldas Y, Xia Z, Feng Q, Liang S, Pedersen A, Kjeldsen NJ, Liu C, Maguin E, Doré J, Pons N, Le Chatelier E, Prifti E, Li J, Jia H, Liu X, Xu X, Ehrlich SD, Madsen L, Kristiansen K, Rogel-Gaillard C, Wang J. 2016. A reference gene catalogue of the pig gut microbiome. Nat Microbiol. 1, 16161
Historique
Leif Andersson, Alan L Archibald, Cynthia D Bottema, Rudiger Brauning, Shane C Burgess, Dave W Burt, Eduardo Casas, Hans H Cheng, Laura Clarke, Christine Couldrey, Brian P Dalrymple, Christine G Elsik, Sylvain Foissac, Elisabetta Giuffra, Martien A Groenen, Ben J Hayes, LuSheng S Huang, Hassan Khatib, James W Kijas, Heebal Kim, Joan K Lunney, Fiona M McCarthy, John C McEwan, Stephen Moore, Bindu Nanduri, Cedric Notredame, Yniv Palti, Graham S Plastow, James M Reecy, Gary A Rohrer, Elena Sarropoulou, Carl J Schmidt, Jeffrey Silverstein, Ross L Tellam, Michele Tixier-Boichard, Gwenola Tosser-Klopp, Christopher K Tuggle, Johanna Vilkki, Stephen N White, Shuhong Zhao, Huaijun Zhou and The FAANG Consortium Coordinated international action to accelerate genome-to-phenome with FAAG. 2015. The Functional Annotation of ANimal Genomes project. Genome Biol, 16-57
Bacciu N, Bed'Hom B, Filangi O, Romé H, Gourichon D, Répérant JM, Le Roy P, Pinard-van der Laan MH, Demeure O. 2014. QTL detection for coccidiosis (Eimeria tenella) resistance in a Fayoumi × Leghorn F2 cross, using a medium-density SNP panel. Genet Sel Evol. 46, 14
Baco M., Chu C-Y, Bouet S., Rogel-Gaillard C., Bourneuf E., Le Provost F., Chu C-Y, Vincent-Naulleau S. 2014. Analysis of melanoma-related microRNAs expression during the spontaneous regression of cutaneous melanomas in MeLiM pigs. Pig Cell Melanoma Res. 27, 668-670
Baco M, Chu C, Chiang Y, Marthey S, Le Provost F, Chu C, Vincent-Naulleau S. 2013. Identification of microRNAs involved in the spontaneous regression of cutaneous melanoma in pigs. J Invest Dermatol. 133, S223. Meeting abstract.
Baco M, Yang YT, Marthey S, Chiang YS, Chu CY, Leprovost F, Chu CY, Vincent-Naulleau S. 2013. miRNAs Profile of Cutaneous Melanoma Undergoing Complete Spontaneous Regression in MeLiM Pigs. JOURNAL DER DEUTSCHEN DERMATOLOGISCHEN GESELLSCHAFT. 11, 46-47. Meeting abstract
Badaoui B, Rutigliano T, Anselmo A, Vanhee M, Nauwynck H, Giuffra E, Botti S. 2014. RNA-sequence analysis of primary alveolar macrophages after in vitro infection with porcine reproductive and respiratory syndrome virus strains of differing virulence. PLoS ONE. 9, e91918
Bonnet-Garnier A, Veillard AC, Bed'Hom B, Hayes H, Britton-Davidian J. 2015. Assessing the quality of donor cells: karyotyping methods. Methods Mol Biol. 1222, 83-99
Calenge F, Martin C, Le Floch N, Phocas F, Morgavi D, Rogel-Gaillard C, Quere P. Integrating the characterization of digestive microbiota in phenotyping livestock animals: towards a new tool for animal health control? Inra Prod Anim. 27, 209-222
Calenge F, Mignon-Grasteau S, Chanteloup NK, Brée A, Lalmanach AC, Schouler C. 2014. Broiler lines divergently selected for digestive efficiency also differ in their susceptibility to colibacillosis. Avian Pathology. 43, 78- 81
Carneiro M, Rubin CJ, Di Palma F, Albert FW, Alföldi J, Barrio AM, Pielberg G, Rafati N, Sayyab S, Turner-Maier J, Younis S, Afonso S, Aken B, Alves JM, Barrell D, Bolet G, Boucher S, Burbano HA, Campos R, Chang JL, Duranthon V, Fontanesi L, Garreau H, Heiman D, Johnson J, Mage RG, Peng Z, Queney G, Rogel-Gaillard C, Ruffier M, Searle S, Villafuerte R, Xiong A, Young S, Forsberg-Nilsson K, Good JM, Lander ES, Ferrand N, Lindblad-Toh K, Andersson. 2014. Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication. Science. 345, 1074-1079
Chazara O, Chang CS, Bruneau N, Benabdeljelil K, Kayang BK, Loukou NE, Osei-Amponsah R, Yapi-Gnaore V, Youssao IAK, Chen CF, Pinard-van der Laan MH, Tixier-Boichard M, Bed'Hom B. 2013. Diversity and evolution of the highly polymorphic tandem repeat LEI0258 in the chicken MHC-B region. Immunogenetics 65, 447-459
Corominas J, Marchesi JA, Puig-Oliveras A, Revilla M, Estellé J, Alves E, Folch JM, Ballester M. 2015. Epigenetic regulation of the ELOVL6 gene is associated with a major QTL effect on fatty acid composition in pigs. Genet Sel Evol. 47, 20
Corominas J, Ramayo-Caldas Y, Puig-Oliveras A, Estelle J, Castello A, Alves, Pena RN, Ballester M, Folch JM. 2013. Analysis of porcine adipose tissue transcriptome reveals differences in de novo fatty acid synthesis in pigs with divergent muscle fatty acid composition. BMC Genomics. 14, 843
Dawson HD, Loveland JE, Pascal G, Gilbert JG, Uenishi H, Mann KM, Sang Y, Zhang J, Carvalho-Silva D, Hunt T, Hardy M, Hu Z, Zhao SH, Anselmo A, Shinkai H, Chen C, Badaoui B, Berman D, Amid C, Kay M, Lloyd D, Snow C, Morozumi T, Cheng RP, Bystrom M, Kapetanovic R, Schwartz JC, Kataria R, Astley M, Fritz E, Steward C, Thomas M, Wilming L, Toki D, Archibald AL, Bed'Hom B, Beraldi D, Huang TH, Ait-Ali T, Blecha F, Botti S, Freeman TC, Giuffra E, Hume DA, Lunney JK, Murtaugh MP, Reecy JM, Harrow JL, Rogel-Gaillard C, Tuggle CK. 2013. Structural and functional annotation of the porcine immunome. BMC Genomics 14, 332
Demeure O, Hamzic E, Juin H, Naciri M, Juul-Madsen HR, Okimoto R, Pinard-van der Laan MH, Bed'Hom B. 2013. Investigation of Immune Response to Eimeria maxima in Broilers. Scand J Immunol. 77, 276-277. Meeting abstract
Desjardin C, Charles C, Benoist-Lasselin C, Riviere J, Gilles M, Chassande O, Morgenthaler C, Laloé D, Lecardonnel J, Flamant F, Legeai-Mallet L, Schibler L. 2014. Chondrocytes play a major role in the stimulation of bone growth by thyroid hormone. Endocrinology. 155, 3123-3135
Dhorne-Pollet S, Thélie A, Pollet N. 2013. Validation of novel reference genes for RT-qPCR studies of gene expression in Xenopus tropicalis during embryonic and post-embryonic development. Dev Dyn. 242, 709-717
Endale Ahanda ML, Zerjal T, Dhorne-Pollet S, Rau A, Cooksey A, Giuffra E. 2015. Impact of the genetic background on the composition of the chicken plasma miRNome in response to a stress. PLoS One. 9, e114598
Endale Ahanda ML, Bienvenu T, Sermet-Gaudelus I, Mazzolini L, Edelman A, Zoorob R, Davezac N. 2015. The hsa-miR-125a/hsa-let-7e/hsa-miR-99b cluster is potentially implicated in Cystic Fibrosis pathogenesi. J Cyst Fibros. 14, 571-579
Fernández-Rodríguez A, Estellé J, Blin A, Muñoz M, Créchet F, Demenais F, Vincent-Naulleau S, Bourneuf E. 2014. KIT and melanoma predisposition in pigs: sequence variants and association analysis. Animal Genetics. 45, 445-448
Frésard L, Leroux S, Servin B, Gourichon D, Dehais P, San Cristobal M, Marsaud N, Bed'hom B, Hormozdiari F, Lusis AJ, Beaumont C, Zerjal T, Vignal A, Morisson M, Lagarrigue S,Pitel F. 2014. Transcriptome-wide investigation of genomic imprinting in chicken. Nucl Acids res. 42, 3768-3782
Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E. 2013. MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200. Physiol Genom 45, 151-161
Gertz EM, Schäffer AA, Agarwala R, Bonnet-Garnier A, Rogel-Gaillard C, Hayes H, Mage RG. 2013. Accuracy and coverage assessment of Oryctolagus cuniculus (rabbit) genes encoding immunoglobulins in the whole genome sequence assembly (OryCun2.0) and localization of the IGH locus to chromosome 20. Immunogenetics 65, 749-762
Gourbeyre O, Berri M, Lippi Y, Meurens F, Vincent-Naulleau S, Laffitte J, Rogel-Gaillard C, Pinton P, Oswald I. 2015. Pattern recognition receptors in the gut: analysis of their expression along the intestinal tract and the crypt/villus axis. Physiol Rep. 3, e12225
Guignot F, Reigner F, Perreau C, Tartarin P, Babilliot JM, Bed’Hom B, Vidament M, Mermillod P, Duchamp G. 2015. Preimplantation genetic diagnosis in Welsh pony embryos after biopsy and cryopreservation. J Anim Sc. Ahead
Hamzic B, Bed'Hom B, Juin H, Hawken R, Abrahamsen MS, Elsen JM, Servin B, Pinard-van der Laan MH, Demeure O. 2015. Large-scale Investigation of Response to Eimeria maxima Challenge in Broilers. J Anim Sci. 93, 1830-1840
Hamzic E, Buitenhuis B, Hérault F, Hawken R, Abrahamsen MS, Servin B, Elsen JM, Pinard-van der Laan MH, Bed’Hom B. 2015. Genome-wide association study and biological pathway analysis of the Eimeria maxima response in broilers. Genet Sel Evol. 47, 91
Hamzic E, Pinard-van der Laan MH, Bed'Hom B, Juul-Madsen H. 2015. Annotation and genetic diversity of the chicken collagenous lectins. Mol Immunol. 65, 277-286
Holm JB, Sorobetea D, Kiilerich P, Ramayo-Caldas Y, Estellé J, Ma T, Madsen L, Kristiansen K, Svensson-Frej M. 2015. Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli. PLoS One. 10, e0125495
Jacquier V, Estellé J, Schmaltz-Panneau B, Lecardonnel J, Moroldo M, Lemonnier G, Turner-Maier J, Duranthon V, Oswald IP, Gidenne T, Rogel-Gaillard C. 2015. Genome-wide immunity studies in the rabbit: transcriptome variations in peripheral blood mononuclear cells after in vitro stimulation by LPS or PMA-ionomycin. BMC Genomics. 16, 26
Jacquier V, Combes S, Oswald IP, C. Rogel-Gaillard, Gidenne T. 2014. Early modulation of the cecal microbial activity in the young rabbit with rapidly fermentable fiber: Impact on health and growth. Journal of Animal Science. 92, 5551-5559
Kjærup RM, Dalgaard TS, Norup LR, Hamzic E, Sørensen P, Juul-Madsen HR. 2014. Characterization of cellular and humoral immune responses after IBV infection in chicken lLines differing in MBL serum concentration. Viral Immunol. 27, 529-542
Larzul C, Ducrocq V, Tudela F, Juin H, Garreau H. 2014. The length of productive life can be modified through selection: an experimental demonstration in the rabbit. J Anim Sci. 92, 2395-2401
Mach N, Berri M, Esquerré D, Chevaleyre C, Lemonnier G, Billon Y, Lepage P, Oswald IP, Doré J, Rogel-Gaillard C, Estellé J. 2014. Extensive expression differences along porcine small intestine evidenced by transcriptome sequencing. PLoS ONE. 9, e88515
Mach N, Berri M, Estellé J, Leveneez F, Lemonnier G, Denis C, Leplat JJ, Chevaleyre C, Billon Y, Rogel-Gaillard C, Lepage P. 2015. Early life establishment of the swine gut microbiome and impact on host phenotypes. Environ Microbiol Rep. 7, 554-569
Mach N, Gao Y, Lemonnier G, Lecardonnel J, Oswald IP, Estelle J, Rogel-Gaillard C. 2013. The peripheral blood transcriptome reflects variations in immunity traits in swine: towards the identification of biomarkers. BMC Genomics. 14, 894
Mahjoub N, Dhorne-Pollet S, Fuchs X, Endale Ahanda ML, Lange E, Klupp B, Arya A, Loveland J, Lefevre F, Mettenleiter T, Giuffra E. 2015. A 2.5 kb deletion contaning a cluster of nine microRNAs in the LAT locus of the pseudorabies virus affects the host response of porcine trigeminal ganglia during established latency. J Virol. 89, 428-442
Mignon-Grasteau S, Moreri U, Narcy A, Rousseau X, Rodenburg TB, Tixier-Boichard M, Zerjal T. 2015. Robustness to chronic heat stress in laying hens: a meta-analysis. Poultry Science. 94, 586-600
Miller I, Rogel-Gaillard C, Spina D, Fontanesi L, de Almeida AM. 2014. The rabbit as an experimental and production animal: from Genomics to Proteomics. Curr Prot Peptide Sci. 15, 134-135
Moro C, Cornette R, Vieaud A, Bruneau N, Gourichon D, Bed’Hom B, Tixier-Boichard M. 2015. Quantitative effect of a CNV on a morphological trait in chickens. PLoS One. 10, e0118706
Nie W, O'Brien PC, Fu B, Wang J, Su W, He K, Bed'Hom B, Volobouev V, Ferguson-Smith MA, Dobigny G, Yang F. 2015. Multidirectional chromosome painting substantiates the occurrence of extensive genomic reshuffling within Accipitriformes. BMC Evol Biol. 15, 205
Puig-Oliveras A, Ramayo-Caldas Y, Corominas J, Estellé J, Pérez-Montarelo D, Hudson NJ, Casellas J, Folch, Maria Ballester JM. 2014. Differences in muscle transcriptome among pigs phenotypically extreme for fatty acid composition. PLoS ONE. 9, e99720
Ramayo-Caldas Y, Fortes MR, Hudson NJ, Porto-Neto LR, Bolormaa S, Barendse W, Kelly M, Moore SS, Goddard ME, Lehnert SA, Reverter A. 2014. A marker-derived gene network reveals the regulatory role of PPARGC1A, HNF4G, and FOXP3 in intramuscular fat deposition of beef cattle. J Anim Sci. 92, 2832-2845
Rostellato R, Bonfatti, V, Larzul C, Bidanel JP, Carnier P. 2015. Estimates of genetic parameters for content of boar taint compounds in adipose tissue of intact males at 160 and 220 days of age. J Anim Sci. 93, 4267-4276
Roux PF, Marthey S, Djari A, Moroldo M, Esquerré D, Estellé J, Klopp C, Lagarrigue S, Demeure O. 2015. Comparison of whole-genome (13X) and capture (87X) resequencing methods for SNP and genotype callings. Anim Genet. 46, 82-86
Ruscanu S, Jouneau L, Urien C, Bourge M, Lecardonnel J, Moroldo M, Loup B, Dalod M, Elhmouzi-Younes J, Bevilacqua C, Hope J, Vitour D, Zientara S, Meyer G, Schwartz-Cornil. 2013. Dendritic Cell Subtypes from Lymph Nodes and Blood Show Contrasted Gene Expression Programs upon Bluetongue Virus Infection. J Virol. 87, 9333-9343
Sanchez MP, Tribout T, Iannuccelli N, Bouffaud M, Servin B, Tenghe A, Dehais P, Muller N, Schneider MP, Mercat MJ, Rogel-Gaillard C, Milan D, Bidanel JP, Gilbert H. 2014. A genome-wide association study of production traits in a Large White commercial population: evidence of haplotypes affecting meat quality. Genetics Selection Evolution. 46, 12
Sintubin P, Collin A , Bordas A, Zerjal T, Tesseraud S, Buyse J, Dridi S. 2014. Expression profile of hypothalamic neuropeptides in chicken lines selected for high or low residual feed intake. Neuropeptides. 48, 213-220
Tixier-Boichard M, Verrier E, Rognon X, Zerjal T. 2015. Farm animal genetic and genomic resources from an agroecological perspective. Front Genet. 6, 1-3
Tomas J, Wrzosek L, Bouznad N, Bouet S, Mayeur C, Noordine ML, Honvo-Houeto E, Langella P, Thomas M, Cherbuy C. 2013. Primocolonization is associated with colonic epithelial maturation during conventionalization. The FASEB J. 27, 645-655
Tran TS, Narcy A, Carré B, Gabriel I, Rideau N, Gilbert H, Demeure O, Bed'Hom B, Chantry-Darmon C, Boscher MY, Bastianelli D, Sellier N, Chabault M, Calenge F, Le Bihan-Duval E, Beaumont C, Mignon-Grasteau S. 2014. Detection of QTL controlling digestive efficiency and anatomy of the digestive tract in chicken fed a wheat-based diet. Genet Sel Evol. 46, 25
Wrzosek L, Miquel S, Noordine ML, Bouet S, Chevalier-Curt MJ, Robert V, Philippe C, Bridonneau C, Cherbuy C, Robbe-Masselot C, Langella P, Thomas M. 2013. Bacteroides thetaiotaomicron and Faecalibacterium prausnitzii influence the production of mucus glycans and the development of goblet cells in the colonic epithelium of a gnotobiotic model rodent. BMC Biol. 11, 61
